Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1359 | ATGGATCAAAGCTCTGAGCTTTACAGATTGCTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGATCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCACCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGTTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTTAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACCACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA | 708 | 54.94 | MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAATSEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANHHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 26655724 | 26657360 | - | ClG42_10g0135900.10 | Clacu10g1359 | 259983 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1359 | 235 | CDD | bHLH_AtAIG1_like | 61 | 136 | - | - | |
| Clacu10g1359 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 69 | 124 | IPR036638 | GO:0046983(InterPro) | |
| Clacu10g1359 | 235 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 44 | 232 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Clacu10g1359 | 235 | SMART | finulus | 71 | 120 | IPR011598 | GO:0046983(InterPro) | |
| Clacu10g1359 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 65 | 114 | IPR011598 | GO:0046983(InterPro) | |
| Clacu10g1359 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 69 | 115 | IPR011598 | GO:0046983(InterPro) | |
| Clacu10g1359 | 235 | Gene3D | - | 61 | 125 | IPR036638 | GO:0046983(InterPro) | |
| Clacu10g1359 | 235 | FunFam | transcription factor bHLH30 | 60 | 123 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g0774 | Clacu-Chr3:8726986 | Clacu10g1359 | Clacu-Chr10:26655724 | 3.00E-34 | dispersed | |
| Clacu06g1053 | Clacu-Chr6:17884736 | Clacu10g1359 | Clacu-Chr10:26655724 | 1.80E-39 | dispersed | |
| Clacu08g1326 | Clacu-Chr8:23274711 | Clacu10g1359 | Clacu-Chr10:26655724 | 5.40E-25 | dispersed | |
| Clacu10g1359 | Clacu-Chr10:26655724 | Clacu11g0755 | Clacu-Chr11:7380409 | 1.80E-25 | dispersed | |
| Clacu10g1359 | Clacu-Chr10:26655724 | Clacu05g2500 | Clacu-Chr5:33100251 | 2.90E-39 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48500 | PF00010 | HLH | 3.60E-12 | No_clan | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1359 | - | - | - | 0.0 |