Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1374 ATGTTTTTGGTAGGGAAAAGGATAAAGACTGCCATTTTGTACTTCAGAGACTCGGAAATAAACTACAAGGAACTCGCAAAGTTGCTTCACTTTTCTCTCTGTGCTTGCATTGTTGGTTTTGATATTGCTTTGATTGTGAATCAAGGTTCACTGCTTGAGTTTCGGGTCAGCCATCAACAGATCTGGCCTGAGAGTGTGTTTGAGCCGGAGCTGTTGATGGAGCCACTTGTTGATGGTATGAGTTCTTTACTGAAAACTCAGAACCCGACATCTACATCAAGGAATCTCGATTCATCTCGCCAGCCATCTCCTAAACAGTCTAGGAATGAAGCAACTTCTTCGGCGTCCTACCTTTGGTCTCAAAATTGTGCCAAGAAACCCCTTCGCCATCCAAATGGTTCTTCTGTAAGTAGTAAAAAACATCCTACCAATTTGAACGTGCAGCTTGAAGGTTTAACTGATGTGAAAAATCATACACACGTTTCTAACAAGGGGAAATCCGAGCTAGTAAACCCAACAGATAGTTCACATAAATCAACTGAAAGTTCTTTTCAGAAGAAGGTTCCTTTGGAGGGAGGTGAAGCAGAACCTCTTGTGAAGCATATCATCGATGATTCTAAGGATTGTTGTTCAAGTGGCTCAGAAGAATCTGGAAATCAAGTATTGAACGCATCGAAAGTAGCTGCCACGCAAATAATTGATCAACTAAAGTCTCAGCCAGCTGAAATATCTTGTCCAAGTCCTCAGAACAGCTTATATTCCACGACTTTATATGCAGAGGCCAAACAAAGTTTCTCAAACACAGAAGTCAGTGAATGTGCAAGCAGCATTGAAAAGTCTTGTGAAAGCATCGACATCACAAATTCCCTTGATCTTGACAAAAGCAGGAAAACAAGTGTTTACCGAGGCAGCACTGGCAGTGATATCAGTGATGAAAGCAATTCGAGTAGTTTAAGCAATGCCATGTATAAGCCTCATAAAGCAAATGATACAAGATGGGAAGCAATGCAAGTTGTGAGATCTCATGATGGGATGTTAGGACTTAACCATTTCCGGTTGCTGCGAAGACTGGGATGTGGTGATATTGGCAGTGTCTATCTTTCAGAGTTAACTGGTACCAAAACTTACTTTGCCATGAAGGTTATGGATAAGGCTGCTTTGGCAAGTAGGAAGAAGCTTCTGAGGGCTCAGACTGAACGCGAGATATTGCAATCTCTGGATCATCCTTTCCTGCCAACTTTGTATACACACTTTGAGACAGAGAAGTTCTCTTGTTTGGTAATGGAGTTTTGCCCTGGGGGCGACTTGCATGCGCTTAGGCAGAGACAGCCCGGAAAATTTTTTCCAGAGCATGCTGCAAGATTCTATGTGGCTGAAGTTCTCCTTGCTTTGGAGTATCTGCACATGCTTGGGATAATCTACAGGGACCTAAAACCTGAAAATGTGTTAGTGAGAGACGATGGGCACATAATGCTATCTGATTTTGACCTGTCTCTTAGATGCGCAGTCTCCCCGACACTTGTTAAATCATCAAACTCGGGGTTAGAAGCTAAAAGCTCGGGTTACTGTGCTCAGCCTGCCTGCATTGAGCCAACTTGCATAATGCAGCCAGATTGTATCCAGCCAGCATGTTTTACACCTCGCTTCCTAAGCAGACACAGGAAAGAAAAGAAGTCCAAACCGAAGAGTGAAGTATATCATCAAGTGAGCCCTCTACCGGAGCTCATTGCCGAACCCACAAGTGCAAGATCGATGTCCTTCGTTGGTACACATGAGTACCTGGCACCTGAAATCATAAAAGGTGAAGGCCATGGCAGTGCCGTGGATTGGTGGACTTTTGGGATCTTTCTTTACGAGCTTTTGTTTGGCCGAACTCCGTTCAAGGGGGCTGGGAACCGTGCTACTTTGTTTAATGTGGTTGGTCAGCCATTGAGATTTCCTGAGTCTCCTTCTGTGAGCTTTGCAGCAAGGGACTTGATCCGAGGTTTGCTTGTAAAAGAACCACAGCATCGTCTCGCTTATAGGCGTGGTGCTACCGAGATCAAGCAACATCCATTCTTCCAGAGCGTGAATTGGGCACTCATCCGCTGTGCCAATCCTCCCGAGGTGCCAAGAGTAGATGTCATTGATTTCTCTTCAAGGATGGAGACACCACACGCACCGGCAGGCGAAAAGATGCCGGGAGTCGATGTGAAGCCTTCAGGTAATTATTTAGAGATCGACTTCTTTTGA 2232 44.58 MFLVGKRIKTAILYFRDSEINYKELAKLLHFSLCACIVGFDIALIVNQGSLLEFRVSHQQIWPESVFEPELLMEPLVDGMSSLLKTQNPTSTSRNLDSSRQPSPKQSRNEATSSASYLWSQNCAKKPLRHPNGSSVSSKKHPTNLNVQLEGLTDVKNHTHVSNKGKSELVNPTDSSHKSTESSFQKKVPLEGGEAEPLVKHIIDDSKDCCSSGSEESGNQVLNASKVAATQIIDQLKSQPAEISCPSPQNSLYSTTLYAEAKQSFSNTEVSECASSIEKSCESIDITNSLDLDKSRKTSVYRGSTGSDISDESNSSSLSNAMYKPHKANDTRWEAMQVVRSHDGMLGLNHFRLLRRLGCGDIGSVYLSELTGTKTYFAMKVMDKAALASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHALRQRQPGKFFPEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSNSGLEAKSSGYCAQPACIEPTCIMQPDCIQPACFTPRFLSRHRKEKKSKPKSEVYHQVSPLPELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAGNRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQSVNWALIRCANPPEVPRVDVIDFSSRMETPHAPAGEKMPGVDVKPSGNYLEIDFF 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26810597 26815061 - ClG42_10g0137400.10 Clacu10g1374 259998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1374 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1374 743 Gene3D Phosphorylase Kinase; domain 1 349 434 - -
Clacu10g1374 743 Pfam Protein kinase domain 352 502 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1374 743 Pfam Protein kinase domain 584 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1374 743 ProSiteProfiles Protein kinase domain profile. 351 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1374 743 MobiDBLite consensus disorder prediction 164 186 - -
Clacu10g1374 743 MobiDBLite consensus disorder prediction 299 323 - -
Clacu10g1374 743 Gene3D Transferase(Phosphotransferase) domain 1 435 503 - -
Clacu10g1374 743 FunFam Serine/threonine-protein kinase D6PK-like 349 434 - -
Clacu10g1374 743 MobiDBLite consensus disorder prediction 151 191 - -
Clacu10g1374 743 Gene3D Transferase(Phosphotransferase) domain 1 582 705 - -
Clacu10g1374 743 FunFam serine/threonine-protein kinase D6PK-like 435 502 - -
Clacu10g1374 743 SUPERFAMILY Protein kinase-like (PK-like) 326 713 IPR011009 -
Clacu10g1374 743 FunFam serine/threonine-protein kinase D6PK-like 582 705 - -
Clacu10g1374 743 SMART serkin_6 351 687 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1374 743 PANTHER FLIPPASE KINASE 1-RELATED 193 707 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu10g1374 743 MobiDBLite consensus disorder prediction 83 115 - -
Clacu10g1374 743 CDD STKc_phototropin_like 350 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1164 Clacu-Chr1:17491782 Clacu10g1374 Clacu-Chr10:26810597 6.10E-198 dispersed
Clacu02g1101 Clacu-Chr2:20704663 Clacu10g1374 Clacu-Chr10:26810597 7.50E-99 dispersed
Clacu04g0157 Clacu-Chr4:3912043 Clacu10g1374 Clacu-Chr10:26810597 1.60E-147 dispersed
Clacu05g0012 Clacu-Chr5:330238 Clacu10g1374 Clacu-Chr10:26810597 9.50E-182 dispersed
Clacu09g0792 Clacu-Chr9:7112060 Clacu10g1374 Clacu-Chr10:26810597 5.30E-39 dispersed
Clacu09g0847 Clacu-Chr9:7872016 Clacu10g1374 Clacu-Chr10:26810597 6.50E-53 dispersed
Clacu10g1374 Clacu-Chr10:26810597 Clacu11g0425 Clacu-Chr11:3994231 6.60E-114 dispersed
Clacu10g1374 Clacu-Chr10:26810597 Clacu01g2192 Clacu-Chr1:33290963 1.00E-183 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73891 PF00069 Pkinase 9.30E-36 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1374 K08286 - csv:101219962 1281.16