Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1380 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGACGTTTTGCGCGATTTTTGGGATTTTGGGAATTTTGAAGAGGTTTTTCGATTTTTGTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTACGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAGATAAGGACACTATGCGAAGCACCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAGATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCACCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCTGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTTGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAGAGTAAGAAAATGGGATCCTTTCGGGAGCAGTTCATCATCGAACCAAGCAACCTCATCGGTCGTTATTTCATTGCCAAACAAGAGCTTTATATAATTCAATAG 1683 42.66 MRIHAPSPLRNEDHTYDDVLRDFWDFGNFEEVFRFLCRNCSKMAGLEELKKKLTPLFDAEKGLSTDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKRCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26905831 26912196 - ClG42_10g0138000.10 Clacu10g1380 260004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1380 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1380 560 SUPERFAMILY NTF2-like 406 558 IPR032710 -
Clacu10g1380 560 Pfam Protein kinase domain 129 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1380 560 FunFam Mitogen-activated protein kinase kinase 3 405 559 - -
Clacu10g1380 560 SMART serkin_6 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1380 560 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524(InterPro)
Clacu10g1380 560 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 102 414 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Clacu10g1380 560 Gene3D Phosphorylase Kinase; domain 1 101 206 - -
Clacu10g1380 560 SUPERFAMILY Protein kinase-like (PK-like) 127 417 IPR011009 -
Clacu10g1380 560 Gene3D - 408 558 - -
Clacu10g1380 560 CDD PKc_MAPKK_plant_like 126 385 - -
Clacu10g1380 560 Gene3D Transferase(Phosphotransferase) domain 1 207 407 - -
Clacu10g1380 560 ProSiteProfiles Nuclear transport factor 2 domain profile. 408 558 IPR018222 -
Clacu10g1380 560 ProSiteProfiles Protein kinase domain profile. 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1380 560 FunFam mitogen-activated protein kinase kinase 3 207 403 - -
Clacu10g1380 560 FunFam mitogen-activated protein kinase kinase 3 98 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1380 Clacu-Chr10:26905831 Clacu11g0310 Clacu-Chr11:2793512 3.30E-57 dispersed
Clacu10g1380 Clacu-Chr10:26905831 Clacu11g0348 Clacu-Chr11:3146577 3.30E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73892 PF00069 Pkinase 2.50E-59 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1380 K20607 - csv:101217978 1003.05