Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1381 ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCATATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAATGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATTGA 561 50.27 MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26924184 26926459 + ClG42_10g0138100.10 Clacu10g1381 260005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1381 186 Coils Coil 104 124 - -
Clacu10g1381 186 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Clacu10g1381 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 142 - -
Clacu10g1381 186 MobiDBLite consensus disorder prediction 134 160 - -
Clacu10g1381 186 Pfam Lateral organ boundaries (LOB) domain 25 122 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0508 Clacu-Chr7:6278713 Clacu10g1381 Clacu-Chr10:26924184 5.50E-33 dispersed
Clacu09g2278 Clacu-Chr9:37532957 Clacu10g1381 Clacu-Chr10:26924184 7.60E-36 dispersed
Clacu10g1381 Clacu-Chr10:26924184 Clacu11g0751 Clacu-Chr11:7346825 2.50E-38 dispersed
Clacu01g2572 Clacu-Chr1:35981163 Clacu10g1381 Clacu-Chr10:26924184 1.20E-31 transposed
Clacu02g1367 Clacu-Chr2:26849147 Clacu10g1381 Clacu-Chr10:26924184 3.00E-39 transposed
Clacu09g0071 Clacu-Chr9:697441 Clacu10g1381 Clacu-Chr10:26924184 1.10E-22 transposed
Clacu11g1302 Clacu-Chr11:22050335 Clacu10g1381 Clacu-Chr10:26924184 5.10E-46 transposed
Clacu01g1388 Clacu-Chr1:25208404 Clacu10g1381 Clacu-Chr10:26924184 7.60E-50 wgd
Clacu10g1381 Clacu-Chr10:26924184 Clacu06g1830 Clacu-Chr6:28860152 3.50E-56 wgd
Clacu10g1381 Clacu-Chr10:26924184 Clacu09g1968 Clacu-Chr9:34538593 2.90E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48501 PF03195 LOB 2.80E-42 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1381 - - - 0.0