Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1415 ATGAAAGAAAAGAGTGAAAGTGGAGGTGGGTATGTGAGAGCAGATCAAATAGATCTGAAGAGCTTAGACGAGCAGTTACAGAGACATTTGAGCAAAGCATGGACCATGGAGAAGAACAAGAAGAGGGAAGATGAGGAAGGCGTCGGCGTCGGCGGCGGTGGAGGAGGAGGCGTCGGCGGAGGAAGGCCGGCTATCACTAGGCAGGAGTGGGAGATTGACCCTTCTAAACTCATCATCAAAGCCGTCATAGCTCGTGGCACTTTTGGAACTGTTCATCGTGGAATTTATGATGGTCAAGATGTTGCTGTTAAACTTCTTGACTGGGGGGAAGAGGGGCATAGGTCGGAGGCAGAAATCGCGTCGCTTAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAGTTTATAGGAGCAACAATAGGCTCCTCAGATCTACACGTACAAACAGAAAATGGCCAAATTGGCATGCCCAGCAATATTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAATCCTACCTCATAAAGAACAGGAGGAAAAAGCTGGCTTTCAAAGTAGTCGTGCAGCTAGCATTAGACCTTGCAAGAGGGTTGAGCTATCTTCATTCACAGAAGATTGTTCATAGAGATGTCAAAACAGAAAATATGCTTCTGGACAAAACGAGAACGGTAAAAATTGCAGACTTTGGCGTTGCTCGTGTTGAGGCCTCAAATCCCAATGATATGACTGGCGAGACTGGAACACTTGGGTATATGGCTCCAGAGGTTCTCAATGGCAATCCATATAACAGGAAATGTGATGTCTACAGCTTTGGCATCTGTTTATGGGAAATATACTGCTGCGATATGCCATATCCCGACCTTAGCTTCTCAGAAGTGACATCAGCTGTTGTCCGACAGAATCTGAGGCCAGAGATTCCTCGGTGTTGCCCGAGCTCGCTTGCAAATGTAATGAAGCGATGCTGGGATGCTAACCCGGACAAGCGTCCAGAGATGGATGAGGTTGTAACCATGTTGGAAGCAATCGACACATCAAAGGGTGGAGGTATGATCCCCCTCGATCAGTCGCAAGGCTGTTTTTGCTTCCGCAGGTACCGGGGGCCTTGA 1143 47.42 MKEKSESGGGYVRADQIDLKSLDEQLQRHLSKAWTMEKNKKREDEEGVGVGGGGGGGVGGGRPAITRQEWEIDPSKLIIKAVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATIGSSDLHVQTENGQIGMPSNICCVVVEYCPGGALKSYLIKNRRKKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVTMLEAIDTSKGGGMIPLDQSQGCFCFRRYRGP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27302698 27306101 + ClG42_10g0141500.10 Clacu10g1415 260039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1415 380 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 352 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Clacu10g1415 380 SMART serkin_6 77 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 PRINTS Tyrosine kinase catalytic domain signature 212 230 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 PRINTS Tyrosine kinase catalytic domain signature 322 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 PRINTS Tyrosine kinase catalytic domain signature 174 187 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 MobiDBLite consensus disorder prediction 32 48 - -
Clacu10g1415 380 FunFam Kinase suppressor of Ras 1 66 161 - -
Clacu10g1415 380 Gene3D Transferase(Phosphotransferase) domain 1 177 367 - -
Clacu10g1415 380 FunFam Serine/threonine-protein kinase HT1 177 362 - -
Clacu10g1415 380 SUPERFAMILY Protein kinase-like (PK-like) 63 351 IPR011009 -
Clacu10g1415 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1415 380 Gene3D Phosphorylase Kinase; domain 1 64 160 - -
Clacu10g1415 380 MobiDBLite consensus disorder prediction 32 64 - -
Clacu10g1415 380 CDD STKc_MAP3K-like 83 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0568 Clacu-Chr5:4788853 Clacu10g1415 Clacu-Chr10:27302698 4.70E-139 dispersed
Clacu09g0722 Clacu-Chr9:6264419 Clacu10g1415 Clacu-Chr10:27302698 2.50E-147 dispersed
Clacu10g1415 Clacu-Chr10:27302698 Clacu11g1310 Clacu-Chr11:22301673 3.70E-60 dispersed
Clacu01g1361 Clacu-Chr1:24907993 Clacu10g1415 Clacu-Chr10:27302698 5.10E-54 wgd
Clacu10g1415 Clacu-Chr10:27302698 Clacu06g1799 Clacu-Chr6:28476743 6.50E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73896 PF07714 PK_Tyr_Ser-Thr 2.10E-64 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1415 - - - 0.0