Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1424 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCATGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTCGCTTCTGTCTAGCTATGACTCAATACTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATCAGAGCTTCTTCTAGCAGAAATTGCCCATGTCTCTGCCCCGCACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATCGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATTGAACACGATGATACGAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG 834 47.72 MESGRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSSYDSILKENAVLKSEVASLTEKCQAQGLNGGEAPIPSELLLAEIAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27376278 27380610 + ClG42_10g0142400.10 Clacu10g1424 260048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1424 277 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Clacu10g1424 277 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Clacu10g1424 277 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Clacu10g1424 277 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Clacu10g1424 277 SUPERFAMILY Homeodomain-like 63 126 IPR009057 -
Clacu10g1424 277 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu10g1424 277 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Clacu10g1424 277 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g1424 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 242 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Clacu10g1424 277 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Clacu10g1424 277 Gene3D - 67 130 - -
Clacu10g1424 277 Coils Coil 144 164 - -
Clacu10g1424 277 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1513 Clacu-Chr1:27228531 Clacu10g1424 Clacu-Chr10:27376278 8.00E-30 dispersed
Clacu05g2663 Clacu-Chr5:34277841 Clacu10g1424 Clacu-Chr10:27376278 2.70E-22 dispersed
Clacu10g0858 Clacu-Chr10:17583141 Clacu10g1424 Clacu-Chr10:27376278 3.30E-25 dispersed
Clacu10g1424 Clacu-Chr10:27376278 Clacu11g1614 Clacu-Chr11:27301265 3.20E-21 dispersed
Clacu10g1424 Clacu-Chr10:27376278 Clacu09g1931 Clacu-Chr9:34194018 2.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48503 PF00046 Homeodomain 4.30E-18 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1424 K09338 - csv:101212142 460.685