Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1427 ATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGAGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCGCTGTATTTCTACACGTCGTCTGTGGGAGGACCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTACAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCCGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCCATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAAAGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGAAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACGAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGTCGTGAGATTCAACAACATTTGTGTTTGTCACTCGTTCGTCGTGTTCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCAACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGCTCTAGTTTGAATATGCCTTCTTCTACTCGAAGCGTCCGTGCACTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAATTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCAACGACGACGAGGACGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCGAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2148 44.46 MDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLKDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRSVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSNDDEDDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27418634 27422303 - ClG42_10g0142700.10 Clacu10g1427 260051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1427 715 Pfam Ion transport protein 58 383 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1427 715 ProSiteProfiles cAMP/cGMP binding motif profile. 456 586 IPR000595 -
Clacu10g1427 715 Gene3D Helix hairpin bin 383 447 - -
Clacu10g1427 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 42 693 - -
Clacu10g1427 715 CDD CAP_ED 456 587 IPR000595 -
Clacu10g1427 715 SMART cnmp_10 456 587 IPR000595 -
Clacu10g1427 715 SUPERFAMILY cAMP-binding domain-like 386 581 IPR018490 -
Clacu10g1427 715 MobiDBLite consensus disorder prediction 701 715 - -
Clacu10g1427 715 MobiDBLite consensus disorder prediction 683 698 - -
Clacu10g1427 715 MobiDBLite consensus disorder prediction 683 715 - -
Clacu10g1427 715 FunFam Cyclic nucleotide-gated ion channel 1 454 572 - -
Clacu10g1427 715 Gene3D Jelly Rolls 454 574 IPR014710 -
Clacu10g1427 715 SUPERFAMILY Voltage-gated potassium channels 49 378 - -
Clacu10g1427 715 Gene3D - 61 381 - -
Clacu10g1427 715 FunFam Cyclic nucleotide-gated ion channel 1 383 447 - -
Clacu10g1427 715 Pfam Cyclic nucleotide-binding domain 479 566 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1427 Clacu-Chr10:27418634 Clacu10g1459 Clacu-Chr10:27746792 3.40E-184 dispersed
Clacu02g2179 Clacu-Chr2:34961923 Clacu10g1427 Clacu-Chr10:27418634 9.40E-203 transposed
Clacu04g0949 Clacu-Chr4:23713646 Clacu10g1427 Clacu-Chr10:27418634 1.10E-173 transposed
Clacu05g2846 Clacu-Chr5:35692995 Clacu10g1427 Clacu-Chr10:27418634 3.00E-244 transposed
Clacu06g1389 Clacu-Chr6:24806474 Clacu10g1427 Clacu-Chr10:27418634 3.40E-240 transposed
Clacu07g1700 Clacu-Chr7:31777533 Clacu10g1427 Clacu-Chr10:27418634 1.20E-92 transposed
Clacu10g0627 Clacu-Chr10:8510796 Clacu10g1427 Clacu-Chr10:27418634 1.10E-96 transposed
Clacu11g0608 Clacu-Chr11:5862014 Clacu10g1427 Clacu-Chr10:27418634 2.10E-101 transposed
Clacu10g1427 Clacu-Chr10:27418634 Clacu06g1797 Clacu-Chr6:28461353 6.80E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1427 K05391 - csv:101216651 1339.32