Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1431 ATGGATCTGGAGAGTGCTATTGGGGGCCACCCAATCAAGAAAGATTCATGGAGAGCTGTTTTAACTTTGGCTTATCAAAGCTTGGGGGTTGTTTATGGCGATTTGAGCACTTCCCCTTTGTATGTTTACAAAAGTACTTTTGCTGAGGATATTCAGCACTCTGAATCCAACGAAGAGATTTATGGAGTTCTTTCTTTTGTTTTCTGGACTCTCACGCTCATTCCTTTGATTAAGTACGTTTTTATTGTGCTTCGAGCTGATGATAATGGCGAAGGAGGAACTTTCGCTTTGTACTCATTGCTCTGCCGCCATGCCCGAGTTAGCTCCTTGCCCAATTGCCAACTTGCAGATGAGGACCTTTCGGAATATACAAAAGATGGGATGGATTTAACCAACAAGAATACTTGTGGGTCGAGATTGAAATCGACATTAGAGAAGCACAGAGTGCTGCAGAGGGTTTTGCTTGTTCTAGCTTTGATTGGGGCTTGCATGGTGATTGGAGATGGAGTTCTTACACCTGCAATTTCTGTTTTCTCTGCGGTTTCTGGGCTGGAATTTTCCATGGCTAGAGAACACCATCGCTATGTTGAAGTCCCGGTTGCTTGTGCCATATTGGTAATCCTGTTTGCGATTCAACATTATGGAACCCATCGAGTTGGGTTTCTGTTTGCACCAGTTGTAATTACCTGGCTCCTCTGTATCAGTTCCATAGGGCTGTACAATATCTTCCACTGGAATCCACATGTTTACCGAGCACTCTCCCCATATTATATGTACAAATTTCTGAAGAAGACCCAAAGGGGAGGTTGGATGTCCCTCGGCGGAATCCTGTTATGTATTACAGGTTCAGAAGCAATGTTTGCTGATCTCGGGCACTTCTCGCAGCTATCTATCAAGATTGCTTTCTCTTTTGTGGTTTATCCATCTTTGGTCCTGGCATACATGGGACAAGCTGCTTATCTTTCTCAACATCATGGTGCGGAAAATAACTACCGAATTGGATTTTACGTGTCTGTTCCTGAGAAAATAAGAGTGCCTGTTCTTGTGATCGCCATTTTAGCCGCAGTGGTAGGAAGTCAAGCTGTCATTACTGGGACTTTTTCGATAATAAAACAGTGCTCCTCATTGGGTTGCTTCCCGAGGGTCAAAATTGTTCATACCTCCTCGAAAATCCATGGTCAGATTTATATACCGGAGATCAACTGGACGTTGATGCTCTTATGCTTGGCTATTACCATTGGCTTTCGAGACACGAAACGCATGGGCAATGCATCAGGCTTAGCAGTGATAACTGTTATGCTGGTGACAACCTGCCTAATGTCTGTAGTCATCATCTTGTGCTGGCATAAAAGTTTTCTCTATGCCATTGCCTTCATACTCATTTTCGGTTCAATCGAATCACTCTACTTTTCAGCATCTCTCATCAAGTTTCGAGAAGGGGCCTGGGTTCCCATTGCCCTCTCATTCATCTTCCTAATAGTCATGTATGTATGGCATTACGGAACGCGCAAAAAATACGAATTTGATGTTCAAAACAAAGTCTCAATCAACTGGCTCCTAGGCCTAGGTCCCAGTTTAGGCATTGTGAGAGTACGCGGGATTGGCCTCATATACACCGAACTCGTCTCAGGAATCCCCGCCATCTTCTCCCACTTCGTAACAAACCTCCCCGCCTTCCACCAAGTCCTAGTCTTCCTCTGCATCAAATCCGTCCCTGTCCCACACGTGAGACCAGGAGAAAGGTTCCTAGTAGGACGAGTTGGGCCAAAAGAGTACCGTCTCTACCGATGCATAGCACGATATGGCTATCGTGACATCCACAAAGACGACATGGAGTTCGAGAAGGACTTGGTGTGCAGCATTGCCGAGTTCATCCGGTCCGAAAAGGCAGAGACAAGCGTAAAGCTAGAAGATGTAGAAGAAAGTGAGAGAATGACAGTAGTTGGGACATCTTCAACACATGTAGATGGAGTGAGAATGTGTGAAGATGAAGGAGAAACAGCAGAAACATCAGAGGTAAGAGAGATAAAATCACCAAAAAGGCTGAGAAAAAGAGTGAGGTTTGTTGTACCAGAGAGTCCACGAATGGAAATGGAAACAAGGAGGGAGCTGCAAGAGCTAATGGAAGCAAGAGAAGCAGGAATGGCTTTCATAATGGGACATTCATATGTGAAAGCAAAGAGAGGATCAGGTTTGGTGAAGAAAGTGGTGATAAATTATGGGTATGATTTTTTGAGAAGAAACTCAAGAGGGCCAAGTTATGCTTGGAGTGTGCCTCATGCATCTACTTTAGAGGTGGGAATGGTCTACCAAGTTTGA 2319 44.5 MDLESAIGGHPIKKDSWRAVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSESNEEIYGVLSFVFWTLTLIPLIKYVFIVLRADDNGEGGTFALYSLLCRHARVSSLPNCQLADEDLSEYTKDGMDLTNKNTCGSRLKSTLEKHRVLQRVLLVLALIGACMVIGDGVLTPAISVFSAVSGLEFSMAREHHRYVEVPVACAILVILFAIQHYGTHRVGFLFAPVVITWLLCISSIGLYNIFHWNPHVYRALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFSFVVYPSLVLAYMGQAAYLSQHHGAENNYRIGFYVSVPEKIRVPVLVIAILAAVVGSQAVITGTFSIIKQCSSLGCFPRVKIVHTSSKIHGQIYIPEINWTLMLLCLAITIGFRDTKRMGNASGLAVITVMLVTTCLMSVVIILCWHKSFLYAIAFILIFGSIESLYFSASLIKFREGAWVPIALSFIFLIVMYVWHYGTRKKYEFDVQNKVSINWLLGLGPSLGIVRVRGIGLIYTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPGERFLVGRVGPKEYRLYRCIARYGYRDIHKDDMEFEKDLVCSIAEFIRSEKAETSVKLEDVEESERMTVVGTSSTHVDGVRMCEDEGETAETSEVREIKSPKRLRKRVRFVVPESPRMEMETRRELQELMEAREAGMAFIMGHSYVKAKRGSGLVKKVVINYGYDFLRRNSRGPSYAWSVPHASTLEVGMVYQV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27452568 27457380 + ClG42_10g0143100.10 Clacu10g1431 260055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1431 772 Pfam K+ potassium transporter C-terminal domain 533 771 IPR053952 -
Clacu10g1431 772 Pfam K+ potassium transporter integral membrane domain 23 519 IPR053951 -
Clacu10g1431 772 NCBIfam potassium uptake protein 23 772 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu10g1431 772 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 15 772 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1060 Clacu-Chr10:22538122 Clacu10g1431 Clacu-Chr10:27452568 8.30E-168 dispersed
Clacu10g1431 Clacu-Chr10:27452568 Clacu11g0182 Clacu-Chr11:1531686 2.90E-189 dispersed
Clacu05g1393 Clacu-Chr5:15414801 Clacu10g1431 Clacu-Chr10:27452568 1.20E-246 transposed
Clacu05g2719 Clacu-Chr5:34720073 Clacu10g1431 Clacu-Chr10:27452568 0.00E+00 transposed
Clacu07g0513 Clacu-Chr7:6458224 Clacu10g1431 Clacu-Chr10:27452568 3.60E-289 transposed
Clacu10g1431 Clacu-Chr10:27452568 Clacu09g1930 Clacu-Chr9:34180129 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1431 K03549 - csv:101211664 1472.22