Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1434 ATGGACCGCAGTTTTCTATACAACCAATTTGCTCCACTGGCTGGAATGATCGCCGCCGAGTGCGCCACCGTCGGCTCAAACACCGTCTACAAAGCCATTAGCGGCCATGAAATCAGCTTCTATGTCTTCACCTTCTACACTTGTCTCGCTGCCGCTCTCGTTCTTCTTCCTTTCGCCTTAATCTTCCGCAGATCTGGCGTTTTTCCGTCCGATAAGTTGTCGTTCTTCCTCAGATTGATCAGCCTGTCGGCGATGGGAGTTGGATGTCAGCTGTTTTCGTATAAAGGTTTGGAATACAGTTCGCCTACGCTTGCTTCCGCCATTAGCAATCTCATTCCAGCTCTCACTTTCATCTTGGCCGTTCTCTTTGGGATGGAGAAACTAGCTTTGAGAAGCTCAAGCAGCATAGCCAAAATCGTTGGCTCGACAGTCTCCATAACAGGTGCACTAGTAGTGGTTCTCTATAAAGGTCCAGTCATTCTATCAAACCCATTTTCTAGGCCAACCAGATTGAATCTTCCTCCTCGTCGTTTGGGCTCTTCCCAACCAAATTGGATAATGGGTGGCCTCTGTTTTTTTGCTCAGTACCTTCTCAACTCTTTCTGGTACATTGTTCTGACCCAAACGATGAACATATATCCAGATGAACTAGTTGTGGTGTGCTTATTTTATGTGTTCGAGGTCATAATAGCTGCACCAATATGCCTATTAGCGGAAGGAAACATCGGTGCTTGGAAGCTGAAAAATAGTCTGGAAGTGGTTGCTGTTTTAAACTCGGGATGTGTGGGTCAATCCTTCGTCTCTGCAATCCACACATGGGGTGTACATGTCAAAGGGCCTGTTTATGTATCAAGTTTCAGGCCACTCTCAATTGCCATTGCTGCTGCTACAGGTGTTATCTTCCTTGGGGACGATCTTCATCTTGGAAGTATTATTGGAGCAATGATAATAGCAAGTGGGTTTTACTCTATAATGTGGGGGAAAATAAAAGAAGAGGACTTGAAGGGACAGGATGGCTTCTCAAGCTTGAAGTCTTCATCAACAGATAAGATTCCATTGTTGAAAAGCTGTAAAGTTCAAAATGACTAA 1089 45.0 MDRSFLYNQFAPLAGMIAAECATVGSNTVYKAISGHEISFYVFTFYTCLAAALVLLPFALIFRRSGVFPSDKLSFFLRLISLSAMGVGCQLFSYKGLEYSSPTLASAISNLIPALTFILAVLFGMEKLALRSSSSIAKIVGSTVSITGALVVVLYKGPVILSNPFSRPTRLNLPPRRLGSSQPNWIMGGLCFFAQYLLNSFWYIVLTQTMNIYPDELVVVCLFYVFEVIIAAPICLLAEGNIGAWKLKNSLEVVAVLNSGCVGQSFVSAIHTWGVHVKGPVYVSSFRPLSIAIAAATGVIFLGDDLHLGSIIGAMIIASGFYSIMWGKIKEEDLKGQDGFSSLKSSSTDKIPLLKSCKVQND 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27482274 27489016 + ClG42_10g0143400.10 Clacu10g1434 260058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1434 362 Pfam EamA-like transporter family 21 146 IPR000620 GO:0016020(InterPro)
Clacu10g1434 362 PANTHER WAT1-RELATED PROTEIN 15 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu10g1434 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 330 - -
Clacu10g1434 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g0256 Clacu-Chr10:3128918 Clacu10g1434 Clacu-Chr10:27482274 2.10E-19 dispersed
Clacu10g1434 Clacu-Chr10:27482274 Clacu11g1504 Clacu-Chr11:26195377 3.20E-37 dispersed
Clacu10g1434 Clacu-Chr10:27482274 Clacu10g1435 Clacu-Chr10:27498748 1.20E-121 tandem
Clacu10g1434 Clacu-Chr10:27482274 Clacu09g1923 Clacu-Chr9:34115303 1.80E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1434 - - - 0.0