Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1435 ATGGAGAGAAGCTTGTTTTACAAAGATGTTGTGCCATTCGCGGCCATGGTTGCGGCGGAGTGCGCCACCGTTGGCTCCAACACCGGCTTCAAAGCCGCCACAGCTAGAGGCATCAGCTACTACGTCTTCACCCTCTACGTTTGTATGGTCGCCGCCGCCGCCCTCGTCCCGTTTGCAGTTATCTTTCATAAGTCGCCGGAGCTTCCTCCCAACAGAATTTCCTTTTTCTTCAAAATCGTCTGCCTCTCCGCGCTCGGACTATTCTGCCAATTGCTTGGAAACAAAGGACTTGAGTACAGCTCACCAACTCTTTCATCCGCCATTAGCAACCTAATTCCAGCTTTCACTTTCATTATGGCTGTCTTTTTTAGGATGGAAAAGATAGATTTGAAAAGAAGCAGCAGCATAGTGAAAATTGTGGGGTCAACAGTGTCCATAGCAGGTGCTTTGGTAGTGGTTTTGTACAAAGGCCCAATTGTGATATCAAACCCATATTCTCATGGCCCAAAAGAGTTGGGCCTCCTTTATCAAAATTCCCCTTTGGGCTCTTCACATCCACAGCCCAATTGGATAATGGGTGGCCTTTGCTTTGTTTTTCAATACCTTTGCAACTCCTTTTGGTACATTCTTCAGACCCAAATCATAAAAGTTTACCCAGATGAGGTAAGTGTGGTGGCAGTATACTACGTTATCCAGGCAGTTTTAACTGCCCCAATTTGTTTGATAGCAGAAACAGATATGAGTGCTTGGAAGCTAACAAATCCACTCAGTTTTCTTTTGATTTTCAACTCGGGTTTGATGGGGCAGTCTTTTGTGGCTGCCATTCACACATGGGGACTTAACTTGAAGGGACCTGTTTATGTGTCTAGTTTTAGGCCATTGTCCATTGCCATTGCAGCTGCTATGGGTGCCCTTCTCCTTGGTGATGATCTTCATCTTGGAAGTATAATTGGAGCAATCATAATATCAATTGGATTCTATGGCATATTGTGGGGAAAAGCAAAAGAAGAAGAATTGAAGGAATTAGATGGTGTTTGTGGGTTGGAATCTTCATCCAAAGCTCCATTGCTGCAATATTATAGAGTTGAAGATGCATAA 1098 44.35 MERSLFYKDVVPFAAMVAAECATVGSNTGFKAATARGISYYVFTLYVCMVAAAALVPFAVIFHKSPELPPNRISFFFKIVCLSALGLFCQLLGNKGLEYSSPTLSSAISNLIPAFTFIMAVFFRMEKIDLKRSSSIVKIVGSTVSIAGALVVVLYKGPIVISNPYSHGPKELGLLYQNSPLGSSHPQPNWIMGGLCFVFQYLCNSFWYILQTQIIKVYPDEVSVVAVYYVIQAVLTAPICLIAETDMSAWKLTNPLSFLLIFNSGLMGQSFVAAIHTWGLNLKGPVYVSSFRPLSIAIAAAMGALLLGDDLHLGSIIGAIIISIGFYGILWGKAKEEELKELDGVCGLESSSKAPLLQYYRVEDA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27498748 27505924 + ClG42_10g0143500.10 Clacu10g1435 260059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1435 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Clacu10g1435 365 Pfam EamA-like transporter family 23 146 IPR000620 GO:0016020(InterPro)
Clacu10g1435 365 PANTHER WAT1-RELATED PROTEIN 14 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu10g1435 365 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1923 Clacu-Chr9:34115303 Clacu10g1435 Clacu-Chr10:27498748 1.30E-77 dispersed
Clacu09g1924 Clacu-Chr9:34129247 Clacu10g1435 Clacu-Chr10:27498748 3.60E-49 dispersed
Clacu10g1435 Clacu-Chr10:27498748 Clacu11g1504 Clacu-Chr11:26195377 3.00E-43 dispersed
Clacu10g1434 Clacu-Chr10:27482274 Clacu10g1435 Clacu-Chr10:27498748 1.20E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1435 - - - 0.0