Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1451 ATGGCCGCCGCCGGAGGAACAGAGGCTTTCCCCGATCTCGGCCGCCACTGCCAGCACTCCGATTGCCACCAACTCGATTTCCTCCCCTTCACCTGCGACGGTTGCCAAAAGGTGTTCTGTTTGGAGCATCGCGGTTTAAAATCCCACGACTGTCCTAAATCCGATCGAAACAGCCGAAAAGTGGTGGTTTGCGAAATCTGCTCGACGTCGATCGAGACCACCGGAAAGGACGGCGGCGACGAGACCAGGATTTTGGAAAGGCATCACGAATCGGGAGATTGCGATCCGAGCAAGAAGAAGAAGCCTACATGTGCGGTGAGGCGGTGCCGGGAGATTCTTACGTTTTCCAATACTTGTGTTTGTAAAACCTGCCGGATGAAGGTGTGCTTGAAACACCGGTTTCCGGCGGAGCATGGTTGTGGACGGCCGTCGTCGACGGCAGCGGCGGTGGTAGATAAAGGGCGGTGGAATGAAAAGTTTATGGCGGCTTTGGGGTTGAGGAGCGGTAGCGATTGTGGGAAGAGAGAACGGCCGACGGCGGCGAAGGGATCTTCTCCGACTGCCCCATCTGTTAAAGCTTGTTGA 585 56.07 MAAAGGTEAFPDLGRHCQHSDCHQLDFLPFTCDGCQKVFCLEHRGLKSHDCPKSDRNSRKVVVCEICSTSIETTGKDGGDETRILERHHESGDCDPSKKKKPTCAVRRCREILTFSNTCVCKTCRMKVCLKHRFPAEHGCGRPSSTAAAVVDKGRWNEKFMAALGLRSGSDCGKRERPTAAKGSSPTAPSVKAC 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27659410 27660088 + ClG42_10g0145100.10 Clacu10g1451 260075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1451 194 Gene3D - 81 157 IPR035896 -
Clacu10g1451 194 SMART AN1_Zf_4 17 56 IPR000058 GO:0008270(InterPro)
Clacu10g1451 194 SMART AN1_Zf_4 104 145 IPR000058 GO:0008270(InterPro)
Clacu10g1451 194 SUPERFAMILY AN1-like Zinc finger 96 148 IPR035896 -
Clacu10g1451 194 ProSiteProfiles Zinc finger AN1-type profile. 98 148 IPR000058 GO:0008270(InterPro)
Clacu10g1451 194 MobiDBLite consensus disorder prediction 168 194 - -
Clacu10g1451 194 SUPERFAMILY AN1-like Zinc finger 10 58 IPR035896 -
Clacu10g1451 194 ProSiteProfiles Zinc finger AN1-type profile. 11 59 IPR000058 GO:0008270(InterPro)
Clacu10g1451 194 Gene3D - 2 70 IPR035896 -
Clacu10g1451 194 Pfam AN1-like Zinc finger 104 142 IPR000058 GO:0008270(InterPro)
Clacu10g1451 194 Pfam AN1-like Zinc finger 17 55 IPR000058 GO:0008270(InterPro)
Clacu10g1451 194 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 9 171 - GO:0005737(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0345 Clacu-Chr4:12302792 Clacu10g1451 Clacu-Chr10:27659410 1.10E-35 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1451 - - - 0.0