Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1459 ATGGCGGCCTCTGCTCGAGCTTTCTTCCTGTCTCGTGTCACTGACTTTTCAATTAAGCCCCGCCTACCTCCCCAACCACCGCCGCCGCCCCCGCCCTTGCCTTCTTTTTCCTATTCACATCTCAGCCTTCAACGGCGGCGCTTTCCCCCCACGTCTGGTGCAACCACTGTCAGCTGCCTTATCTCCGGTGTTGATGGTGGTGGAGTTTCCGATGACTTTGTTTCTACCCGGAAGTTGAAATTCGATCGCGGATTCTCCGTAATCGCCAATATGCTTAAGCGGATTGAGCCGCTTGATACATCCGATATCTCCAAGGGCGTTTCTGATGTTGCTAAGGATTCCATGAAGCAGACTATTTCTTCAATGTTGGGTTTGCTTCCGTCGGATCAGTTCGCTGTCACCGTTAGGGTTTCCAAAAGCCCTCTCCATAACCTCCTCTCTTCGTCAATTATCACCGGGTACACTCTGTGGAACGCGGAGTATCGGTTGTCTTTGATGAGGAATTTCGATATCTCGCCGGATAATTTGATGGGCTTGGACAGGTCGAAACCACTTGAAGTATCGGATGTTGAGGAGATTCGGGTTGACGTTGATTCCAATATGGAAGATTTGGATACAAGGCCTCGTCTCTTGACCGATTTGCCACCCGAGGCGTTGAAGTACATCCAGCAGTTGCAGTCAGAATTATCAGATCTTAAGGATGAACTTAATGCTCGGAAGCAAGAAAATATGCAGATAGAACATGGCAGAGGAAACAGAAACGATTTGTTAGACTATCTGCGGTCTTTGGATTCTAATATGGTCACTGAACTCTGCAAACCATCTACGTCGGAGGTGGAGGAAATCATTCACGAGCTTGTTGGAAACATATTGCAAAGGTTTTTCAAAGATGATGCTAGCTCTACTTTCGTTGAGGATTCGAGTGTGGCAGATTTAGAGAAACTTGCAGATGCTGGCAATGAGTTTTGTGACACTGTAGGCACTTCTCGGGATTACCTAGCAAAGCTTTTATTCTGGTGTATGTTATTGGGGCATCACTTGAGAAGCTTGGAGAATAGACTGCAGTTAAGCTGTGTCGATTTGCATCATCCGGCTATTAAGTCCCAGCACAATGGACTTGGTAAGGGTTCCACGAAGGATTCTTTGGAAATCATTAAATTTACTTTCATGAGATCGGAAGAGCAATTGGCTCGGCACCGTTTGAATATCTCGGCGATCAACTCTCGCATCTATGTTCTCCATTGCCACAAAATGTTCGATTGTGGTGGATACAAGTCGCAGTACATAGGCGGTCACAAGGAGAAATTCGTGAGGTTGGATGATTTGGATTCAAATTTGTCAATGCCCTCTGGAACAAGCAAAATGAAGAAATGTCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATTAGCCGATCGAAGCCACAAAATGCGTCCAAATCGTTCCGAAGAGGAGTTCAAAGGAGCTCCGACGGAATCAAAACCCTCGGTCGGTCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATTTGAAAGTATCGGAACAGAAAATCTTCGATCCGCAAGACAAATCGCTCCTCTTCTGGAATAAGCTTTTCGTGCTGTGCTGCATCCTCGCCGTCTCTGTCGATCCACTCTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCCATCGATGTTTTCTACTTGATTCGCATGGCGTTTCAGTTCCGGACGGCTTACATTGCGCCATCGTCAAGAGTATTTGGTCGCGGCGAGCTTGTGATCGATCCGACAGAAATCGCCCAGCGGTATCTTCAGCGCTACTTTGTAGCCGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGCTCGGAAGTTTTAGCCACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTTATTAGATTTATTCCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTTGCCAGCCATATAGCGGGAGCATTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGCCAAGCATGCAGAAGCAGCGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGTCCGGTTATAAGGATTGGAGAAATATTAGCGTTGAAGTTCTCACTAAGAAATGCACCGCCGTGGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCAGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAGGGGCTGCTCACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATCTTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACCGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAACAATGGATGCACCATCGACTTCTTCCGCCAGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTAGAAACCAGAGGCGTTGATGAAGAGAGCTTGGTTCAAAGTTTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTCTATTTGCGAACATGGATGAGCGTCTTCTAGACGCAATATGCGAGAGGCTGAAGCCAACATTATACACAGAGAACACATACATAGTACGAGAGGGCGACCCAGTCGACGAAATGCTTTTCATAATCCGTGGCCGCCTAGAGAGCGTCACGACCGACGGCGGCCGGAGCGGCTTCTACAACCGCGGCGTATTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACGTGGGCCCTCGACCCGAAGTCCGGCTCCAACCTCCCCTCCTCCACTCGCACTGTCCATGCCCTTACCGAGGTTGAAGCCTTCGCCTTAGAGGCTGAGGAGCTCAAGTTCGTGGCCAGCCAGTTCCGGCGCCTGCATAGCCGGCAGGTTCAACACACCTTCAGATTCTACTCTCAGCAGTGGCGAACCTGGGCATCGTGTTTTATACAGGCGGCGTGGCGGCGGTATTTGAAGCGGAAGATTGCGGAGCTGCGACGGAAGGAGGAGGAAGAAGAGGATGCGGCGGCGGCTGCGGCTGCGTATGGCACGTCGAGGCTTGGGGCTACAATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGATTGAGAAATGTGAGTGGGAAGAGCTTGATTAACTTGCAGAAGCCGGCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 3459 48.63 MAASARAFFLSRVTDFSIKPRLPPQPPPPPPPLPSFSYSHLSLQRRRFPPTSGATTVSCLISGVDGGGVSDDFVSTRKLKFDRGFSVIANMLKRIEPLDTSDISKGVSDVAKDSMKQTISSMLGLLPSDQFAVTVRVSKSPLHNLLSSSIITGYTLWNAEYRLSLMRNFDISPDNLMGLDRSKPLEVSDVEEIRVDVDSNMEDLDTRPRLLTDLPPEALKYIQQLQSELSDLKDELNARKQENMQIEHGRGNRNDLLDYLRSLDSNMVTELCKPSTSEVEEIIHELVGNILQRFFKDDASSTFVEDSSVADLEKLADAGNEFCDTVGTSRDYLAKLLFWCMLLGHHLRSLENRLQLSCVDLHHPAIKSQHNGLGKGSTKDSLEIIKFTFMRSEEQLARHRLNISAINSRIYVLHCHKMFDCGGYKSQYIGGHKEKFVRLDDLDSNLSMPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMSGYKDWRNISVEVLTKKCTAVGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAAAAAYGTSRLGATILASRFAANALRGHRLRNVSGKSLINLQKPAEPDFSVYKGE 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27746792 27760501 + ClG42_10g0145900.10 Clacu10g1459 260083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1459 1152 Pfam Protein of unknown function (DUF760) 255 358 IPR008479 -
Clacu10g1459 1152 Pfam Protein of unknown function (DUF760) 90 168 IPR008479 -
Clacu10g1459 1152 MobiDBLite consensus disorder prediction 19 38 - -
Clacu10g1459 1152 Gene3D - 533 853 - -
Clacu10g1459 1152 SUPERFAMILY Voltage-gated potassium channels 523 850 - -
Clacu10g1459 1152 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 503 1129 - -
Clacu10g1459 1152 Coils Coil 222 242 - -
Clacu10g1459 1152 Pfam Cyclic nucleotide-binding domain 949 1039 IPR000595 -
Clacu10g1459 1152 Gene3D Jelly Rolls 926 1046 IPR014710 -
Clacu10g1459 1152 Gene3D Helix hairpin bin 856 919 - -
Clacu10g1459 1152 SMART cnmp_10 928 1059 IPR000595 -
Clacu10g1459 1152 SUPERFAMILY cAMP-binding domain-like 858 1048 IPR018490 -
Clacu10g1459 1152 ProSiteProfiles IQ motif profile. 1064 1093 - -
Clacu10g1459 1152 FunFam Cyclic nucleotide-gated ion channel 1 855 919 - -
Clacu10g1459 1152 Pfam Ion transport protein 530 855 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1459 1152 FunFam Cyclic nucleotide-gated ion channel 1 926 1044 - -
Clacu10g1459 1152 ProSiteProfiles cAMP/cGMP binding motif profile. 928 1058 IPR000595 -
Clacu10g1459 1152 MobiDBLite consensus disorder prediction 20 36 - -
Clacu10g1459 1152 Coils Coil 1076 1099 - -
Clacu10g1459 1152 CDD CAP_ED 928 1059 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0701 Clacu-Chr2:7233460 Clacu10g1459 Clacu-Chr10:27746792 1.50E-40 dispersed
Clacu02g1489 Clacu-Chr2:28358284 Clacu10g1459 Clacu-Chr10:27746792 1.10E-299 dispersed
Clacu05g0096 Clacu-Chr5:1060650 Clacu10g1459 Clacu-Chr10:27746792 2.80E-162 dispersed
Clacu05g0097 Clacu-Chr5:1066980 Clacu10g1459 Clacu-Chr10:27746792 3.90E-43 dispersed
Clacu05g0098 Clacu-Chr5:1068041 Clacu10g1459 Clacu-Chr10:27746792 9.10E-67 dispersed
Clacu05g0100 Clacu-Chr5:1072135 Clacu10g1459 Clacu-Chr10:27746792 3.80E-46 dispersed
Clacu05g1036 Clacu-Chr5:9178249 Clacu10g1459 Clacu-Chr10:27746792 2.00E-42 dispersed
Clacu05g1038 Clacu-Chr5:9202738 Clacu10g1459 Clacu-Chr10:27746792 1.60E-111 dispersed
Clacu05g1039 Clacu-Chr5:9215282 Clacu10g1459 Clacu-Chr10:27746792 7.70E-61 dispersed
Clacu05g1040 Clacu-Chr5:9219825 Clacu10g1459 Clacu-Chr10:27746792 4.30E-41 dispersed
Clacu06g1797 Clacu-Chr6:28461353 Clacu10g1459 Clacu-Chr10:27746792 1.20E-181 dispersed
Clacu10g1427 Clacu-Chr10:27418634 Clacu10g1459 Clacu-Chr10:27746792 3.40E-184 dispersed
Clacu10g1459 Clacu-Chr10:27746792 Clacu11g0608 Clacu-Chr11:5862014 1.50E-104 dispersed
Clacu10g1459 Clacu-Chr10:27746792 Clacu01g0052 Clacu-Chr1:477478 5.00E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1459 K05391 - csv:101221166 1366.67