Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1478 ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTCGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTTCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGGCTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGGGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACTGCAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGTGCAAGTGATTCGTATCAAGGCGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGATTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 47.9 MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVASHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27896404 27897982 + ClG42_10g0147800.10 Clacu10g1478 260102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1478 436 SMART amb_all 161 358 IPR002022 -
Clacu10g1478 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570(InterPro)
Clacu10g1478 436 Pfam Pectate lyase 171 352 IPR002022 -
Clacu10g1478 436 Gene3D - 86 429 IPR012334 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Clacu10g1478 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
Clacu10g1478 436 PANTHER PECTATE LYASE 18-RELATED 15 433 IPR045032 GO:0030570(InterPro)
Clacu10g1478 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1517 Clacu-Chr1:27251539 Clacu10g1478 Clacu-Chr10:27896404 2.70E-179 dispersed
Clacu08g1053 Clacu-Chr8:20524947 Clacu10g1478 Clacu-Chr10:27896404 1.10E-185 dispersed
Clacu09g1989 Clacu-Chr9:34755578 Clacu10g1478 Clacu-Chr10:27896404 1.00E-127 dispersed
Clacu10g1478 Clacu-Chr10:27896404 Clacu05g2657 Clacu-Chr5:34212655 3.30E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1478 K01728 - csv:101202789 824.313