Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1480 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCGCCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGGTTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGTAATAACAGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCACCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCCGAAGAAACTTCACTCTTCAAAAACCATCACTGCGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTCGAGAGCTGCAATGCTCCGCTCAATGCTTACGCCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCGAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1176 46.34 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSAAADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGNNRAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSTAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHCDIDSFHSLQKQELLESCNAPLNAYARSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27915146 27919260 + ClG42_10g0148000.10 Clacu10g1480 260104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1480 391 MobiDBLite consensus disorder prediction 40 64 - -
Clacu10g1480 391 CDD AP2 166 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Clacu10g1480 391 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 SMART rav1_2 65 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 SMART rav1_2 167 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 CDD AP2 64 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 SUPERFAMILY DNA-binding domain 64 133 IPR016177 GO:0003677(InterPro)
Clacu10g1480 391 MobiDBLite consensus disorder prediction 30 66 - -
Clacu10g1480 391 ProSiteProfiles AP2/ERF domain profile. 65 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 258 - -
Clacu10g1480 391 Pfam AP2 domain 166 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 Gene3D AP2/ERF domain 166 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 Gene3D AP2/ERF domain 64 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1480 391 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1038 Clacu-Chr8:20403835 Clacu10g1480 Clacu-Chr10:27915146 5.20E-68 dispersed
Clacu09g0347 Clacu-Chr9:2992537 Clacu10g1480 Clacu-Chr10:27915146 3.00E-68 dispersed
Clacu10g1480 Clacu-Chr10:27915146 Clacu11g0957 Clacu-Chr11:10166870 1.50E-64 dispersed
Clacu10g1480 Clacu-Chr10:27915146 Clacu05g2399 Clacu-Chr5:32311312 2.30E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48508 PF00847 AP2 1.70E-08 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1480 - - - 0.0