Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1482 | ATGGATTGGGCGAGCGACTCTTCAGGGCTTCATTCATATCTCAAGGAATGCATTAGTGTTTCAATTGAAGGACAAAATCAGATCGATCGGCATCATCATCTTCCATCTGTTCTTGATAATCGAATTGCTGATTCTTCAACTCGGATCGCAAAAGAAGACTTTCATATTCTCCGATTCCTTGGCCTTTCTCTTCCTTCGTCTTCAACTGGCCTTGTAAATTCTCTTTCACAGTTCTGCATCGTTAGGTTTCTCTCGGAGGAGGCGTTTGGTTTCTTGCCATTGCTCTCCCCTTCCCTTTCCCCACTCCAGATCTTCTTCTCTTTCATTTCCTTACCGTTTCAATCAAGTTTCCAGAGAATGTATGGTTTTGAAGCGCTTACCTTCAACATTCATGGAGGCTATTTGGAGGCCATCGTCCGTGGACATAGGGCTGGCTTGCTGACCGCCGCTGATTATAACAATTTGTGTCAGTGCGAAACCCTAGATGATATCAAGATGCACCTCTCTGCCACTGAGTATGGTCCTTATCTCCAAAACGAACCATCTCCATTACATACAACAACCATTGTGGAGAAATGCACCCTTAAACTGGTTGACGAGTATAAGCACATGTTGTGCCAAGCCACTGAGCCTCTGTCTACCTTCTTAGAGTATATCACATATGGTCACATGATAGACAATGTTGTCCTTATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCACCCTTTGGGCATGTTTGACAGCATTGCTACCTTGGCAGTTGCTCAGAATATGCGGGAACTTTATAGATTGGTGCTTGTTGACACCCCTTTGGCTCCATACTTTTCAGAGTGTATCACATCTGAGGATTTGGATGACATGAACATAGAAATTATGAGGAATACTCTCTATAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAGATCATGTCTGACCTCCTTGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGTATTGGCACTGAGCTTACCCGGGATGATCGAAGGAAGTTGTATTCCAATTTTGGCTTGCTTTATCCCTATGGTCATGAGGAACTTGCAATCTGTGAGGATATTGATCAGGTTCGTGGTGCCATGGAAAAATACCCTCCCTACCAGTCAATTTTTTCCAAGCTATCATATGGTGAGAGCCAGATGCTTGACAAGGCATTCTATGAAGAGGAGGTGAAAAGGCTATGCTTAGCATTTGAGCAACAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGTTGAGGGAACAGGAGATTAGGAACCTAATGTGGATTTCGGAGTGTGTTGCTCAGAACCAGAAGTCGAGGCCTGCGAAACCAAACCAATCACCATCATCACCGTCGATGGACCGGAATCAGAACTTTCCGACCACCATAACCGACTTGGATGAAGATTCTCTCGCTCACTGCGCTTCATTCCTCAAGCGCCACGACATCTTCAATCTCGCCAGCACCTGCAAATATCTTCAACAAGTTGCAAATTCCGACTCCATTTGGCAACGCCTTTTCAGGGAGCGATGGCAGCATCAGTTACCACCTCTTGGTTCTTCCTTAGCTTCAGGAGGAGCTAGGAACGCCTACTTTGCTAGGCTTTCCGATTTGCAACAGTGCAAGTTTGAAGATCCTTTGGTTGCTAGTATCCTCACCCAACCCGAGCCTTATGGCCCCATGCTTTTGGATAGAGATAATATATTCGTTTCTCAGGGCTCCTCAATTCAAATGGTGACTATCACCAAAAATGTTAGCACTCTTGCCACTCTGAATGATCACAATGCGCGTATCACTTGTATGAGGTCGTTTCCCCTTTATGAAACTTCATTTCTTAGAAGTGAAGGACAAAGATCAGGAAATTTTTTGGTAACCTCAAGTTCTGATCACTCAATCCGTTTGTGGTGGAAGGGTTATTGTCAGAAATGTTTTCGAGGTCATAGTGGCCCAGTTTCAATTCTGTCAGATAAACTGTTAGGTGATAGTAACGGCAAATTATTGGCCAGTGGAGGGGAAGATGGTACAGTTCGCCTTTGGTCTCTTAGTTCCAGTGGCAAGCGAGGCAAGAGTGCTTTAAAGGTTACACTACATGGACATGAAAAACCAATTAAATTAATGTCAGTTGCGGGGCATAAGACTTCTCTTTTGGTGAGCATTGCAAGAGACTCCAAGGTAAGAGTTTGGGATGTTACATCAACTATCCGTTCGTCTTGTTGCGTTGGATTAACTTCTCTTCCTGGTGGTCCTATAAACCTTAAGTGCCATGAATCATTGGTCTATGTTGCTACAACTTCCTCTGTTGTTGCAATCGATTTAAGGACTATGCAGAAAGTTCTTACGGCTGCAACTTATCAACCGTTTTTATATTCATTCGAGATGATTCCTTCTAAATCCTTACTATGCACAGGTGGTAGTGGCAGTGCAAAGCTTTGGGATATAAGAAGAAACCAGGATGATCTTAAACCTAAACCTGTAGCTGAATTGGATGGACATAGTGGACCAGTGAGCTTCCTACACATGGATCCCTACAAAGTTGTTACGGGATGCCCAAACGATGTTTATGTACACGTTTGGGAGGTCGATTCAGGCACACCAGCGAATTCTTTGAGTTGCTGGTTCGATGAATATACAGAGGGCAGCACAACATTGTCCTCTATGGCTGTTGATGGGTGTAGATTTGCCACTGCGTCTTATGCTGGTGATATAGGACTTTTACGATATATAGACTATACCAATGCTCTTCGTCCTATTGTTAGACACGACGAGGTTGTCTCAAAATTTTGGGTTCCACAATGCTACAACGATGACGATAATTCAAATCTTTAA | 2889 | 43.68 | MDWASDSSGLHSYLKECISVSIEGQNQIDRHHHLPSVLDNRIADSSTRIAKEDFHILRFLGLSLPSSSTGLVNSLSQFCIVRFLSEEAFGFLPLLSPSLSPLQIFFSFISLPFQSSFQRMYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRPAKPNQSPSSPSMDRNQNFPTTITDLDEDSLAHCASFLKRHDIFNLASTCKYLQQVANSDSIWQRLFRERWQHQLPPLGSSLASGGARNAYFARLSDLQQCKFEDPLVASILTQPEPYGPMLLDRDNIFVSQGSSIQMVTITKNVSTLATLNDHNARITCMRSFPLYETSFLRSEGQRSGNFLVTSSSDHSIRLWWKGYCQKCFRGHSGPVSILSDKLLGDSNGKLLASGGEDGTVRLWSLSSSGKRGKSALKVTLHGHEKPIKLMSVAGHKTSLLVSIARDSKVRVWDVTSTIRSSCCVGLTSLPGGPINLKCHESLVYVATTSSVVAIDLRTMQKVLTAATYQPFLYSFEMIPSKSLLCTGGSGSAKLWDIRRNQDDLKPKPVAELDGHSGPVSFLHMDPYKVVTGCPNDVYVHVWEVDSGTPANSLSCWFDEYTEGSTTLSSMAVDGCRFATASYAGDIGLLRYIDYTNALRPIVRHDEVVSKFWVPQCYNDDDNSNL | 962 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 27922836 | 27937456 | - | ClG42_10g0148200.10 | Clacu10g1482 | 260106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1482 | 962 | SUPERFAMILY | V-type ATP synthase subunit C | 133 | 459 | IPR036079 | - | |
| Clacu10g1482 | 962 | Gene3D | - | 325 | 428 | IPR035067 | - | |
| Clacu10g1482 | 962 | Gene3D | - | 474 | 558 | - | - | |
| Clacu10g1482 | 962 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 640 | 656 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | MobiDBLite | consensus disorder prediction | 459 | 482 | - | - | |
| Clacu10g1482 | 962 | Gene3D | - | 210 | 318 | IPR035067 | - | |
| Clacu10g1482 | 962 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | 120 | 461 | IPR016727 | GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Clacu10g1482 | 962 | Gene3D | ATP synthase (C/AC39) subunit, domain 3 | 133 | 454 | IPR044911 | - | |
| Clacu10g1482 | 962 | PRINTS | G protein beta WD-40 repeat signature | 737 | 751 | IPR020472 | - | |
| Clacu10g1482 | 962 | PRINTS | G protein beta WD-40 repeat signature | 688 | 702 | IPR020472 | - | |
| Clacu10g1482 | 962 | PRINTS | G protein beta WD-40 repeat signature | 644 | 658 | IPR020472 | - | |
| Clacu10g1482 | 962 | Pfam | ATP synthase (C/AC39) subunit | 135 | 460 | IPR002843 | GO:0046961(InterPro) | |
| Clacu10g1482 | 962 | ProSiteProfiles | F-box domain profile. | 481 | 527 | IPR001810 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SMART | WD40_4 | 795 | 833 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SMART | WD40_4 | 605 | 657 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SMART | WD40_4 | 842 | 880 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SMART | WD40_4 | 658 | 701 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SMART | WD40_4 | 710 | 750 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SUPERFAMILY | WD40 repeat-like | 604 | 925 | IPR036322 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | Gene3D | - | 809 | 959 | IPR015943 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | FunFam | V-type proton ATPase subunit | 325 | 428 | - | - | |
| Clacu10g1482 | 962 | Pfam | F-box-like | 496 | 529 | IPR001810 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | SUPERFAMILY | F-box domain | 477 | 540 | IPR036047 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | FunFam | V-type proton ATPase subunit | 133 | 247 | - | - | |
| Clacu10g1482 | 962 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 684 | 704 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 717 | 753 | - | - | |
| Clacu10g1482 | 962 | FunFam | V-type proton ATPase subunit | 210 | 324 | - | - | |
| Clacu10g1482 | 962 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 717 | 753 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 737 | 751 | IPR019775 | - | |
| Clacu10g1482 | 962 | Pfam | WD domain, G-beta repeat | 659 | 701 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | Pfam | WD domain, G-beta repeat | 609 | 656 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | Pfam | WD domain, G-beta repeat | 715 | 750 | IPR001680 | GO:0005515(InterPro) | |
| Clacu10g1482 | 962 | Gene3D | - | 593 | 808 | IPR015943 | GO:0005515(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1482 | K02146 | - | csv:101203260 | 697.967 |