Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1493 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTCGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCGCCGCCGCCTGCGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCCCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATTCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.46 MDLTPAISTAAATISTGGGAVKSPEFDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28111303 28112193 - ClG42_10g0149300.10 Clacu10g1493 260117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1493 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Clacu10g1493 296 MobiDBLite consensus disorder prediction 131 159 - -
Clacu10g1493 296 MobiDBLite consensus disorder prediction 254 296 - -
Clacu10g1493 296 MobiDBLite consensus disorder prediction 16 59 - -
Clacu10g1493 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Clacu10g1493 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Clacu10g1493 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Clacu10g1493 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Clacu10g1493 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Clacu10g1493 296 Gene3D - 191 259 - -
Clacu10g1493 296 MobiDBLite consensus disorder prediction 30 44 - -
Clacu10g1493 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1493 Clacu-Chr10:28111303 Clacu11g0158 Clacu-Chr11:1184217 2.50E-35 dispersed
Clacu04g1091 Clacu-Chr4:25130806 Clacu10g1493 Clacu-Chr10:28111303 3.40E-32 transposed
Clacu10g1493 Clacu-Chr10:28111303 Clacu05g2632 Clacu-Chr5:34000212 4.90E-44 wgd
Clacu10g1493 Clacu-Chr10:28111303 Clacu06g1730 Clacu-Chr6:27903280 1.20E-13 wgd
Clacu10g1493 Clacu-Chr10:28111303 Clacu09g1867 Clacu-Chr9:33415414 1.70E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48510 PF04770 ZF-HD_dimer 7.50E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1493 - - - 0.0