Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1495 ATGGCGAGAGAGATCCCAAAATCTAGCAATGAAGAAGCGTTCATCTCCTTGGGAAGCGAATACTCCGATCCTCAACAATCCTTCTTCCGCGACCGATTTTACGAACTTTACCCTCCGGAGTTCTCAAGAAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTTGTGTTCGTGACGTGTGGGGCGGCGGCATTGAGTGTTGGTCATGAACGGGAAGTGTCGAAGCTTGGAGCATCGATTTCCGGTGGACTGATTGTGACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCCCATATGAATCCGGCCGTTACTTTTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAACCAGGTTCCACTGTATGCAGCAGCTCAATTCAGTGGAGCTACAACAGCAGCCTTTACATTGCGCATATTATTGGACCCAATTCAAGACTTAGGTACAACTTCACCTTCTGGACCAGCGTCTAAAGCACTCCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTTGTCACATCTGCGGTTGCTACCGACACAAAAGCTATAGGAGAGCTTGGAGGCATAGCAGTGGGGTCAGCTGTATGTATCACATCCATCTTTGCTGGGCCAATATCGGGTGGGTCGATGAACCCAGCAAGGTCAATTGGACCAGCGATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACTTGGTCGGCCCAGTTACTGGTACATTGCTTGGGGCATTTTCATATAACTTCGTACGAGCCACTGAAAAACATACCCATCCACTCTCTTTACATTGA 795 48.68 MAREIPKSSNEEAFISLGSEYSDPQQSFFRDRFYELYPPEFSRKLVAEVIATYLLVFVTCGAAALSVGHEREVSKLGASISGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWNQVPLYAAAQFSGATTAAFTLRILLDPIQDLGTTSPSGPASKALLMEIVVSFCMMFVTSAVATDTKAIGELGGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVTGTLLGAFSYNFVRATEKHTHPLSLH 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28165123 28168541 - ClG42_10g0149500.10 Clacu10g1495 260119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1495 264 PANTHER AQUAPORIN NIP2-1 36 256 IPR034294 -
Clacu10g1495 264 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Clacu10g1495 264 Gene3D Glycerol uptake facilitator protein. 18 260 IPR023271 -
Clacu10g1495 264 SUPERFAMILY Aquaporin-like 34 258 IPR023271 -
Clacu10g1495 264 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1495 264 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1495 264 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1495 264 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1495 264 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1495 264 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1495 264 Pfam Major intrinsic protein 39 248 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1260 Clacu-Chr5:12231136 Clacu10g1495 Clacu-Chr10:28165123 8.10E-54 dispersed
Clacu10g1495 Clacu-Chr10:28165123 Clacu10g1496 Clacu-Chr10:28201884 1.50E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1495 K09874 - csv:101205456 424.091