Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1504 | ATGATGTGGAATAATTGGATATGGGTGGTGGGTTTATTATGGTTGTTGGGATTATGGGGATGGAGAGTTGTGAATTGGGTTTGGGTTAGGCCGAAGAAGCTTGAGAAGTTCTTGAGACAGCAAGGCCTCGCCGGCAACTCTTATCGCTTTCTCTTGGGGGATACAAAGGAGATTGCGGCGGCCGTCCACCAAGCCAGATCGCAGCCGATGACCTTCTCCCATGATATTGCCCCACGCGCCACCCCTACCTCTCATACCACCATCCACAAATACGGTAAGGATTCTTTCACATGGGTTGGCACAACTCCAAGAGTGTATATAACAGAGCCTGAACAAGTGAAGATTGTTTTTTCTCAAATAAATGATATTCGTAAGACATCTTCTTTTCCCCTTAGACGAAGAGTGGGAAGTGGGCTTGTCTCTCTTGAGGGTTCTAAATGGGCTAAACATAGAAAGATCATCAACCCTGCATTTCACATGGAGAAGTTGAAGGAAATGTTTCCAGCATTCTCCAAGAGTTGTGGGGACATGGTTAACAAATGGGAAAAGATGATTCCTGAAGAAGGACATTGTGAAATAGATGTGTGGCCTGATTTGCAAAATATGGCTGCCGATGTGATTTCTAGAACTGCATTTGGAAGTAGTTACGAGGAAGGGGAAAAGATCTTCCAGCTCTTGAAAGAGTGGGCTAAGCTATTGATGACATACCTAACAAAGGGAGCTTATTTCATTCCAGGGTTGAGGTATATGCCAACAAAATTAAACAAGAGAATGGGAGAGATTGATAGGAAAATACGAGATATGGTTTGGGGTATTATAAGCAAAAGACAGAATGCAATGAAGAAAGGTGAAGGTTCCAATAATGAAGATCTATTAGGCATTCTTTTAGAATCAAATGCAAATCAAATTGAAGAACAAGAAAACAAGAAAGATGTTGGAATGAGCATAGAAGAAGTAATAAGTGAATGCAGGCTTTTCTACTTTGCTGGGCAAGAAACCACAGCTGCATTGCTTGCTTGGACAATGGTTCTACTTGGTCTAAGTCGTCTAAGAGTAGTAACTATGATCCTAAATGAAGTCCTTAGGCTATACCCTCCCGTTGGAATGCTAGCTCGAGAGATTCACAAGGAAACAAAATTGGGCAATGTTACATTACCAGTTGGAGTATCAATAGGAATACCAATATTATCCATACACCATGACCCAAAAATATGGGGTGAAGATGCACTTGAGTTCAAACCAGAAAGATTTTCAGAAGGAATTTCCAAAGCAACAAAGAATCAAGTATGCTTTGTCCCTTTTGGATGGGGTCCTCGAATTTGCCTTGGCCAAAACTTTGCGTTGATTGAAGCCAAAATAGCATTATCCATGATTTTGCAACAATTCTCATTCACACTTTCTCCAACTTATACTCATGCTCCTATTGCAAACATCACTATTCAACCACAACATGGGGCTCATCTCGTCCTTCTTAAATCACAAACTTTTGATGATTTTTGGTTTGTTCAACAATGGCCACCCGCTGTTTGTGCTCTACAATCAGGACGATGTGTAGGACAGGGATTAAGATCATTCACAATTCATGGTTTGTGGCCTCAAAAAGGAGGGAGCTCTATAACTAATTGTGCTGGCAATTCCTTTGATTTTACTAAGATTGCACATTTAGAAAACAATCTAAACATAGTTTGGCCGAATGTGGTGACGGGAAACAACAAATTCTTCTGGGGTCATGAATGGAACAAACATGGAATTTGCTCAGAGAACAAGTTCGACCAGGCAAGCTTCTTCCAAATTGCGATAAACATGAGGAACAATATCAACCTTCTTAGTGTCTTGAGAACTGGTGGAGTAGTACCAAACGGTGCCTCAAAAGCGAAGCAAAGAGTAGAAAGCTTAATCTCAACCCATTTTGGAAGGGATCCCATTCTTCGGTGTAAAACAGCATCAAATGGCCAAGTCTTATTGACGGAGATTGTTATGTGCTTTGATGACGATGGTACCACCCTCATACACTGCAATAAAGCAAGATCCAATTGTGCTAGGAGTTTTATTTTTTGA | 2058 | 41.06 | MMWNNWIWVVGLLWLLGLWGWRVVNWVWVRPKKLEKFLRQQGLAGNSYRFLLGDTKEIAAAVHQARSQPMTFSHDIAPRATPTSHTTIHKYGKDSFTWVGTTPRVYITEPEQVKIVFSQINDIRKTSSFPLRRRVGSGLVSLEGSKWAKHRKIINPAFHMEKLKEMFPAFSKSCGDMVNKWEKMIPEEGHCEIDVWPDLQNMAADVISRTAFGSSYEEGEKIFQLLKEWAKLLMTYLTKGAYFIPGLRYMPTKLNKRMGEIDRKIRDMVWGIISKRQNAMKKGEGSNNEDLLGILLESNANQIEEQENKKDVGMSIEEVISECRLFYFAGQETTAALLAWTMVLLGLSRLRVVTMILNEVLRLYPPVGMLAREIHKETKLGNVTLPVGVSIGIPILSIHHDPKIWGEDALEFKPERFSEGISKATKNQVCFVPFGWGPRICLGQNFALIEAKIALSMILQQFSFTLSPTYTHAPIANITIQPQHGAHLVLLKSQTFDDFWFVQQWPPAVCALQSGRCVGQGLRSFTIHGLWPQKGGSSITNCAGNSFDFTKIAHLENNLNIVWPNVVTGNNKFFWGHEWNKHGICSENKFDQASFFQIAINMRNNINLLSVLRTGGVVPNGASKAKQRVESLISTHFGRDPILRCKTASNGQVLLTEIVMCFDDDGTTLIHCNKARSNCARSFIF | 685 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28306361 | 28315419 | + | ClG42_10g0150400.10 | Clacu10g1504 | 260128 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1504 | 685 | ProSitePatterns | Ribonuclease T2 family histidine active site 1. | 525 | 532 | IPR018188 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | E-class P450 group I signature | 431 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | E-class P450 group I signature | 88 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | E-class P450 group I signature | 202 | 220 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | E-class P450 group I signature | 441 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | ProSitePatterns | Ribonuclease T2 family histidine active site 2. | 574 | 585 | IPR033130 | - | |
| Clacu10g1504 | 685 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 434 | 443 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu10g1504 | 685 | Gene3D | Cytochrome P450 | 62 | 347 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | Gene3D | Cytochrome P450 | 348 | 492 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | CDD | RNase_T2_euk | 496 | 684 | IPR033697 | - | |
| Clacu10g1504 | 685 | SUPERFAMILY | Cytochrome P450 | 83 | 490 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 16 | 345 | IPR050665 | GO:0004497(PANTHER) | |
| Clacu10g1504 | 685 | SUPERFAMILY | Ribonuclease Rh-like | 496 | 685 | IPR036430 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Clacu10g1504 | 685 | Gene3D | - | 496 | 683 | IPR036430 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Clacu10g1504 | 685 | Pfam | Ribonuclease T2 family | 496 | 672 | IPR001568 | GO:0003723(InterPro)|GO:0033897(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | P450 superfamily signature | 432 | 441 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | P450 superfamily signature | 441 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | Pfam | Cytochrome P450 | 89 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1504 | 685 | Pfam | Cytochrome P450 | 348 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu10g1502 | Clacu-Chr10:28285164 | Clacu10g1504 | Clacu-Chr10:28306361 | 3.60E-20 | dispersed | |
| Clacu10g1504 | Clacu-Chr10:28306361 | Clacu11g1894 | Clacu-Chr11:29993226 | 1.40E-174 | dispersed | |
| Clacu10g1504 | Clacu-Chr10:28306361 | Clacu10g1505 | Clacu-Chr10:28321534 | 2.00E-88 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1504 | - | - | - | 0.0 |