Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1511 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTACCTGAGGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACACCCGGTGACGATAACACCGCCGCTGTTGATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGCTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGAAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGCGATGGAGATGGAGGCTTATCTGTTTCGACCGAAGAGTTTACTAATTCGGATACTTCTGCAGTGAGATCAGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCAAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTATTATAATAACTACAATGTCAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCCGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCAGAATCGCTTCAGCATGCTCGGACTGATGTTTCTAATGGTATCCATCATTCTGCCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGTTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCGTTCTATCCGACCGCCCCGTTTTGGGGTTGTACCGTTCCCGGCGCCTGGACAGTCCCGTGGGTTTCCCAGCCACCATCTCTGAGCCCTGTTGCCCAAAACCATGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATTGACGACCCCGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGACCAACGGAAAGAATCACAAAGCCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCGTAA 1575 45.84 MSEPKDPAIKLFGKTIPLPEASPATPQLPSSLPILTPGDDNTAAVDHDHDSSSSSLSPEANIDGDAEDLEVDKETIRGKSGGTKLEDGDGDGDGDGDGDGDGDGDGGLSVSTEEFTNSDTSAVRSENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSESLQHARTDVSNGIHHSALKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKTNGKNHKAEASPVLQVNPAALSRSIKFHESS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28373475 28375575 - ClG42_10g0151100.10 Clacu10g1511 260135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1511 524 MobiDBLite consensus disorder prediction 1 165 - -
Clacu10g1511 524 ProSitePatterns Zinc finger Dof-type signature. 167 203 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1511 524 MobiDBLite consensus disorder prediction 422 444 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 403 444 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 403 421 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 110 148 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 302 327 - -
Clacu10g1511 524 ProSiteProfiles Zinc finger Dof-type profile. 165 219 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1511 524 MobiDBLite consensus disorder prediction 149 163 - -
Clacu10g1511 524 Pfam Dof domain, zinc finger 163 219 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1511 524 MobiDBLite consensus disorder prediction 70 89 - -
Clacu10g1511 524 PANTHER CYCLIC DOF FACTOR 2 1 524 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1511 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1282 Clacu-Chr4:26848490 Clacu10g1511 Clacu-Chr10:28373475 8.50E-77 dispersed
Clacu08g1711 Clacu-Chr8:26662103 Clacu10g1511 Clacu-Chr10:28373475 2.10E-24 dispersed
Clacu10g1511 Clacu-Chr10:28373475 Clacu10g1579 Clacu-Chr10:29094752 3.80E-55 dispersed
Clacu10g1511 Clacu-Chr10:28373475 Clacu05g2622 Clacu-Chr5:33953345 2.90E-71 wgd
Clacu10g1511 Clacu-Chr10:28373475 Clacu06g1723 Clacu-Chr6:27856622 6.60E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1560 . . . . Bpe02g01453 Bpe14g00173 . . Cmo14g00585 Cmo11g01039 . Cma14g00586 Car11g00855 . . Cpe03g00467 . . . . . . . . Cla10g01453 Cam10g1162 Cec10g1537 Cco10g1513 Clacu10g1511 Cmu10g2275 Cre10g1660 . . . . . Csa05g02462 Chy04g01555 Cme04g01994 Blo17g00365 Blo18g00391 . . . . Bma01g01039 Bma02g00393 . . . . . . . Cpe04g00052 . Bhi11g02870 . . . Hepe05g0758 . . . . . . . . . . Csa03g03750 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu03g0770 . 17 179 C2C2-Dof Transcription Factor Family AT1G29160 58.0 7.7e-45 177.2
Clacu01g2452 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.5e-40 160.6
Clacu01g0161 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 4.2e-42 169.1
Clacu03g0770 . 17 179 C2C2-Dof Transcription Factor Family AT2G34140 55.6 2.4e-43 172.2
Clacu10g2073 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Clacu09g2023 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.0e-38 156.8
Clacu03g0162 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Clacu01g0161 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 2.6e-44 176.4
Clacu10g1511 . 145 524 C2C2-Dof Transcription Factor Family AT5G39660 53.7 2.7e-81 299.7
Clacu10g2073 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 67.3 1.3e-39 161.0
Clacu03g0162 . 69 142 C2C2-Dof Transcription Factor Family AT5G02460 90.5 5.5e-38 155.6
Clacu09g2023 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.3e-36 151.0
Clacu10g2073 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 1.9e-37 153.7
Clacu02g2084 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 54.0 5.6e-37 152.1
Clacu04g0873 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.2e-36 151.0
Clacu06g1644 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.6 1.7e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008734 0 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48511 PF02701 zf-Dof 2.30E-32 No_clan Clacu TF