Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g1511 | ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTACCTGAGGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACACCCGGTGACGATAACACCGCCGCTGTTGATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGCTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGAAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGCGATGGAGATGGAGGCTTATCTGTTTCGACCGAAGAGTTTACTAATTCGGATACTTCTGCAGTGAGATCAGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCAAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTATTATAATAACTACAATGTCAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCCGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCAGAATCGCTTCAGCATGCTCGGACTGATGTTTCTAATGGTATCCATCATTCTGCCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGTTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCGTTCTATCCGACCGCCCCGTTTTGGGGTTGTACCGTTCCCGGCGCCTGGACAGTCCCGTGGGTTTCCCAGCCACCATCTCTGAGCCCTGTTGCCCAAAACCATGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATTGACGACCCCGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGACCAACGGAAAGAATCACAAAGCCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCGTAA | 1575 | 45.84 | MSEPKDPAIKLFGKTIPLPEASPATPQLPSSLPILTPGDDNTAAVDHDHDSSSSSLSPEANIDGDAEDLEVDKETIRGKSGGTKLEDGDGDGDGDGDGDGDGDGDGGLSVSTEEFTNSDTSAVRSENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSESLQHARTDVSNGIHHSALKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKTNGKNHKAEASPVLQVNPAALSRSIKFHESS | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 28373475 | 28375575 | - | ClG42_10g0151100.10 | Clacu10g1511 | 260135 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 1 | 165 | - | - | |
Clacu10g1511 | 524 | ProSitePatterns | Zinc finger Dof-type signature. | 167 | 203 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 422 | 444 | - | - | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 403 | 444 | - | - | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 403 | 421 | - | - | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 110 | 148 | - | - | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 302 | 327 | - | - | |
Clacu10g1511 | 524 | ProSiteProfiles | Zinc finger Dof-type profile. | 165 | 219 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 149 | 163 | - | - | |
Clacu10g1511 | 524 | Pfam | Dof domain, zinc finger | 163 | 219 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu10g1511 | 524 | MobiDBLite | consensus disorder prediction | 70 | 89 | - | - | |
Clacu10g1511 | 524 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 524 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g1282 | Clacu-Chr4:26848490 | Clacu10g1511 | Clacu-Chr10:28373475 | 8.50E-77 | dispersed | |
Clacu08g1711 | Clacu-Chr8:26662103 | Clacu10g1511 | Clacu-Chr10:28373475 | 2.10E-24 | dispersed | |
Clacu10g1511 | Clacu-Chr10:28373475 | Clacu10g1579 | Clacu-Chr10:29094752 | 3.80E-55 | dispersed | |
Clacu10g1511 | Clacu-Chr10:28373475 | Clacu05g2622 | Clacu-Chr5:33953345 | 2.90E-71 | wgd | |
Clacu10g1511 | Clacu-Chr10:28373475 | Clacu06g1723 | Clacu-Chr6:27856622 | 6.60E-100 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48511 | PF02701 | zf-Dof | 2.30E-32 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g1511 | - | - | - | 0.0 |