Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1511 ATGTCGGAGCCAAAAGATCCGGCGATCAAGCTCTTTGGCAAGACGATTCCTCTACCTGAGGCTTCTCCGGCCACTCCTCAGCTTCCATCTTCTTTACCTATTCTCACACCCGGTGACGATAACACCGCCGCTGTTGATCATGACCACGATTCTTCTTCTTCAAGCTTGTCCCCGGAAGCCAATATCGATGGGGATGCTGAAGATCTGGAGGTCGATAAGGAGACTATAAGAGGAAAATCAGGTGGAACTAAGCTGGAAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGATGGCGATGGAGATGGAGGCTTATCTGTTTCGACCGAAGAGTTTACTAATTCGGATACTTCTGCAGTGAGATCAGAGAATTCTAAAGTACTTTCTGGTGAGGAAAGTAATCCGTCAAGTACTACAAAGACTGATGAACAGAATGAAACAAGTAACTCGCAAGAGAAGACTCTCAAGAAACCCGACAAGATACTTCCGTGCCCCCGCTGTAACAGCATGGATACCAAGTTCTGTTATTATAATAACTACAATGTCAATCAACCGCGCCACTTTTGTAAGAACTGTCAAAGGTATTGGACTGCTGGAGGGACAATGAGGAATGTTCCTGTGGGTGCCGGACGTCGTAAGAACAAAAGCTCTGCTTCTCACCATCGTCAGATTATTGTTTCAGAATCGCTTCAGCATGCTCGGACTGATGTTTCTAATGGTATCCATCATTCTGCCCTCAAACCTAATGGCAATGTATTGGCATTTGGTTCAGATGCCCCTCTTTGTGAATCAATGGCTTCCATTTTGAACATTGCTGATAAAACAAGGCAGAATAGTACTAGAAATGGTTTTCAAAAACCTGAAGCTCTGAAAATTCCTGTGGCTTATGAGAATGGTGAAAATGATGATCAGTCTCAGGAATCTGCTGCAACTCCATCATTTATAAATAATGAAGAAGGCAAAACTGGGCCACAAGATCAAGTGATTCATAATTGTCAAGGCTTTTTACCTCCTCAGATTCCATTCTTCCCTGGGGCTCCTTGGCCTTACCCTTGGAATTCACCACAATGGAGCTCTCCTGTTCCACCTCCTACTTTCTATCCACCAGGCATCCCTATGCCGTTCTATCCGACCGCCCCGTTTTGGGGTTGTACCGTTCCCGGCGCCTGGACAGTCCCGTGGGTTTCCCAGCCACCATCTCTGAGCCCTGTTGCCCAAAACCATGCTCCCAACTCTCCAACCTTGGGGAAACATTCAAGAGATGAGAATGTGACCAAGCAAAGCGATTTTGGGGAAGACGAGCAGCAGAAAGATAACAAAGCTGAGAGATGTCTTTGGATACCAAAAACGTTGAGGATTGACGACCCCGGCGAAGCAGCTAAAAGCTCCATATGGGCAACTCTGGGAATAAAAAATGACAAGACTGATTCAGTCAGTGAAGGGCTTTTCAAGGCTTTTCAATCAAAGAAGACCAACGGAAAGAATCACAAAGCCGAAGCCTCTCCAGTCTTGCAAGTCAATCCAGCTGCATTGTCCAGATCAATCAAATTTCATGAAAGCTCGTAA 1575 45.84 MSEPKDPAIKLFGKTIPLPEASPATPQLPSSLPILTPGDDNTAAVDHDHDSSSSSLSPEANIDGDAEDLEVDKETIRGKSGGTKLEDGDGDGDGDGDGDGDGDGDGGLSVSTEEFTNSDTSAVRSENSKVLSGEESNPSSTTKTDEQNETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSASHHRQIIVSESLQHARTDVSNGIHHSALKPNGNVLAFGSDAPLCESMASILNIADKTRQNSTRNGFQKPEALKIPVAYENGENDDQSQESAATPSFINNEEGKTGPQDQVIHNCQGFLPPQIPFFPGAPWPYPWNSPQWSSPVPPPTFYPPGIPMPFYPTAPFWGCTVPGAWTVPWVSQPPSLSPVAQNHAPNSPTLGKHSRDENVTKQSDFGEDEQQKDNKAERCLWIPKTLRIDDPGEAAKSSIWATLGIKNDKTDSVSEGLFKAFQSKKTNGKNHKAEASPVLQVNPAALSRSIKFHESS 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28373475 28375575 - ClG42_10g0151100.10 Clacu10g1511 260135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1511 524 MobiDBLite consensus disorder prediction 1 165 - -
Clacu10g1511 524 ProSitePatterns Zinc finger Dof-type signature. 167 203 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1511 524 MobiDBLite consensus disorder prediction 422 444 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 403 444 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 403 421 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 110 148 - -
Clacu10g1511 524 MobiDBLite consensus disorder prediction 302 327 - -
Clacu10g1511 524 ProSiteProfiles Zinc finger Dof-type profile. 165 219 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1511 524 MobiDBLite consensus disorder prediction 149 163 - -
Clacu10g1511 524 Pfam Dof domain, zinc finger 163 219 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1511 524 MobiDBLite consensus disorder prediction 70 89 - -
Clacu10g1511 524 PANTHER CYCLIC DOF FACTOR 2 1 524 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1282 Clacu-Chr4:26848490 Clacu10g1511 Clacu-Chr10:28373475 8.50E-77 dispersed
Clacu08g1711 Clacu-Chr8:26662103 Clacu10g1511 Clacu-Chr10:28373475 2.10E-24 dispersed
Clacu10g1511 Clacu-Chr10:28373475 Clacu10g1579 Clacu-Chr10:29094752 3.80E-55 dispersed
Clacu10g1511 Clacu-Chr10:28373475 Clacu05g2622 Clacu-Chr5:33953345 2.90E-71 wgd
Clacu10g1511 Clacu-Chr10:28373475 Clacu06g1723 Clacu-Chr6:27856622 6.60E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48511 PF02701 zf-Dof 2.30E-32 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1511 - - - 0.0