Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1527 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCATCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCGGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAATTTATAATGGACCACCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTTGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCCAATGCAAAACACTCGTTTTCGAATTCATCCGATGACGAAGATCCTCAAAATGATTTCTCTTAA 1248 43.43 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGIYNGPPEVKLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNCCRQFKRGYERSNSPCYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELVFGPANAKHSFSNSSDDEDPQNDFS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28575918 28580222 + ClG42_10g0152700.10 Clacu10g1527 260151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1527 415 Pfam Swiss Army Knife protein, DSP-PTPase phosphatase domain 111 186 - -
Clacu10g1527 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 397 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Clacu10g1527 415 SMART PTEN_C2_2 223 394 IPR014020 -
Clacu10g1527 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Clacu10g1527 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Clacu10g1527 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311(InterPro)
Clacu10g1527 415 Gene3D - 284 397 - -
Clacu10g1527 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Clacu10g1527 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Clacu10g1527 415 Pfam C2 domain of PTEN tumour-suppressor protein 314 393 IPR014020 -
Clacu10g1527 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Clacu10g1527 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
Clacu10g1527 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Clacu10g1527 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 394 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1774 Clacu-Chr1:29928768 Clacu10g1527 Clacu-Chr10:28575918 3.80E-36 dispersed
Clacu10g1527 Clacu-Chr10:28575918 Clacu02g0667 Clacu-Chr2:6651261 3.20E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1527 K01110 - csv:101212127 815.839