Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1529 ATGGCGACCTCAAAACCCCAAAGGTCACCGGAGGAGGTCGAAGACATTATCCTTCGCAAAGTCTTCCTCATTTCTCTCACTGATTCTTCCGATTCCGATTCCAGAATCGTCTATCTCGAGCAAACCGCTGCCGAACTCCTTAGCGAGGGCAAACAATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTTTCCGGAAATTTCCCCTCCGCCGAACCCCCTTTTCAGTACCTAATCGGCTGCTACCGTCGAGCTCATGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTCATATTGAAATTTCCCTCAAGCAAGCAAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTAGGGAATCCTGAATTGTTTTCGGGTGCCGATTTAGGTACTAACTCCAATACTTCCCCTTTGCTTCCTTTGATTTTCTCTGAGGTTGGTAGCTCCGTCGATGGATTTGGGGCTAGTACCAGTGTTGGTGGAGCTTTTCAGTGCCCTCCGGGTTTTCTGGAGGAGTTTCTCCGTGATTCCGATTTTGATACATCAGACCCCATCTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTTCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTTAGGTTTCTGGTCAGTTTTCCTGTTGGTGCTAAATCTCTTGTGAATCATCCTTGGTGGATTCCCACTGGTAAATATTCAAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTACTATCTTCATTCACTACAATTAAGACAGTCATGAATAACTTATATGATGGCCTTGCAGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTCTTGAGTATCTTGCAGAGGTGATAAATAGAAACTCATCCAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGCATGTTCGTTAATCTCAGTGCCATCATGCTACGTCTCTGTGAGCCATTTCTAGATGCAAACTTGACCAAAAGGGATAAGATTGATCCAAAATATGTATGTTATAGTAACCGCTTGGAATTGAGAGGATTAACTGCTCTACATGCTTCATCGGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAACTCCGGGCAGTTCAGCGACAATGAAAGTCGCCTGCTACAATCTCAAGAAGCTTCCAGTTCAGGCAGTAATGCTACTATTGGATCTTCTACTGCAAAAGCAAGATCGAGTAATGATAAAAGTAGGTACCCTTTCATATGCGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTCAAAGCCATGCAGGGACAAGGGCCCGCCCCACAGCTTGAAATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATACTAAGGGATGGGTCACTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAACTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCGGAATATATCAGAAATCCCTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAGGTGGTTCATCCGTTACAGCAACATTATTTGAAGGCCACCAACTATCGCTTGAGTATCTTGTTAGGAATCTCTTAAAGCTCTATGTAGACATTGAGTTCACTGGTTCACATACACAGTTTTATGACAAGTTCAACATCCGTCATAACATTGCCGAACTTCTCGAATACCTTTGGCAGGTTCCTAGTCATCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTGAACTTCCTAATCAATGATAGCATATATCTTCTTGATGAAAGTCTTAATAAGATTCTTGAACTTAAAGAGCTTGAAGCCGAAATGTCAAATACCGCAGAATGGGAACGGCGACCTGCTCAAGAGAGGCAGGAGAGAACTCGGCTGTTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCAAATGAGGACGTGAGTATGCTGGCATTTACTTCTGAGCAGATCACGGCTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCCTGCAACTTGTTGGTCCTCAGCGAAGATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCGAAAGAGTTGCTTAAGCAGATCGTTCACATATATGTTCATCTGGCACGAGGTGATTCGGAGAATATTTTCCCAGCTGCCATTTCAAAGGATGGCCGATCGTACAACGAGCAGTTGTTCAATGCTGCAGCAGTTGTACTTGGACGAATTGGAGAAGATGGTAGGATAATACGCGAGTTTACTGATCTTGGTAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTGGGAGATATACCAGACGAATTCCTCGACCCAATCCAATACACTTTGATGAAGGACCCTGTGATCTTACCTTCTTCAAGGATCACAGTTGACAGACCCGTCATTCAAAGACATCTCCTCAGCGATAGCACTGACCCATTCAACCGGTCTCATCTGACTTCTGACATGCTAATACCGAACGAAGAATTGAAAGCAAGAATTGAAGAATTTATCAGGTCACAAGAACTGAAGAAGCAACTGGATGGAGGAGGAGTTGCAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGCGGAGAAATGTTGATTGATTGA 3126 43.31 MATSKPQRSPEEVEDIILRKVFLISLTDSSDSDSRIVYLEQTAAELLSEGKQLRISRDVMERIIIDRLSGNFPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSHIEISLKQAKKLTISYCRIHLGNPELFSGADLGTNSNTSPLLPLIFSEVGSSVDGFGASTSVGGAFQCPPGFLEEFLRDSDFDTSDPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSEEVTEWINNGTQLRTDNSGQFSDNESRLLQSQEASSSGSNATIGSSTAKARSSNDKSRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIARLEKEIELYSQEKLCYEAQILRDGSLIQQALTFYRLMVVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRGGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKELLKQIVHIYVHLARGDSENIFPAAISKDGRSYNEQLFNAAAVVLGRIGEDGRIIREFTDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNEELKARIEEFIRSQELKKQLDGGGVAMQSSKATIQPTSGEMLID 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28589097 28595925 - ClG42_10g0152900.10 Clacu10g1529 260153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1529 1041 SUPERFAMILY RING/U-box 933 1011 - -
Clacu10g1529 1041 Pfam Ubiquitin elongating factor core 259 924 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
Clacu10g1529 1041 SMART Ubox_2 944 1007 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu10g1529 1041 ProSiteProfiles U-box domain profile. 940 1014 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu10g1529 1041 FunFam Ubiquitin conjugation factor e4 a 940 1018 - -
Clacu10g1529 1041 Pfam U-box domain 941 1011 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu10g1529 1041 Coils Coil 519 546 - -
Clacu10g1529 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 940 1018 IPR013083 -
Clacu10g1529 1041 MobiDBLite consensus disorder prediction 423 462 - -
Clacu10g1529 1041 CDD RING-Ubox_UBE4A 943 1011 - -
Clacu10g1529 1041 PANTHER UBIQUITINATION FACTOR E4 8 1016 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1529 K10597 - csv:101211398 1946.01