Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1556 ATGAATATGGAGCAGTATCTTCTGAAGGACTTCGAAGTTGAGCCAAAACATCCTTCAGAGGAAGCCTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAGAAATCGACGACGGAGGTTCCGAAATGTTGCAGATCTCGATAAACGCTCTGAGGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAGTTTATTGATGCCGTGAATCGAGATGAGTACCATCTGTCAGATGAGGCTAGGAGAGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTTGCACTAGACACAGGTGTCAGTGAAAAAGATACATCCAAGAGACAAGAGATTTATGGTTACAATTGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTATGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGTATTGCCACAGAAGGGTGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATATTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAACTGATGGAAACTCTCAGTGAGGGAGGAGAAGACGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCGGTCAGTTGCATTTGCACAGATAAGACTGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTATGTGAAAATTTTATGGAGAATAAAGACCATAGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGATGTTTTAGGCATATTTTTGCAGTCCATATTTCAAAATACCAGCTGCGAAGTGACTAAAGATAAAGAGGGGAAGAACTCAATTGTTGGTGGAACACCAACGGAATCAGCACTATTGGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATCTATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCACTAGTTTTGCCAATGAAGCCTTGAGGACACTTTGCTTAGCCTTCAAAGATATAGAGGACTCCGGTGACAAATCAATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAGTTATACCAAAACTGCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAGTACACATTGGTTAACAATTTGCGGAGTATGGGTGAGGTTGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGAACTGAGGTGGCCAAAGAAAATGCCGATGTGATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTCGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATCTATCAACTTGCTGTACTGGCAGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATTGAAAAGATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGGGTTTCAAATAATAATAATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTATGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTCGTGTTGAAGTTCATCCCTGTTCGTAAAGAAGTATTCACAGCCCAACATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA 3108 41.7 MNMEQYLLKDFEVEPKHPSEEALRRWRSAVSIVRNRRRRFRNVADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHLSDEARRAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVSVALDTGVSEKDTSKRQEIYGYNCYTEKPSRPFWVYVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSVSCICTDKTGTLTTNHMIVSRAWVCENFMENKDHRSVDKLKSEISEDVLGIFLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIYLTEEKVNNATNVITSFANEALRTLCLAFKDIEDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPNFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLNGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVRKEVFTAQHDGYEPIPSGPELA 1035
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 28819254 28832834 - ClG42_10g0155600.10 Clacu10g1556 260180
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1556 1035 SFLD p-type atpase 434 804 IPR044492 -
Clacu10g1556 1035 SMART Cation_ATPase_N_a_2 115 189 IPR004014 -
Clacu10g1556 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
Clacu10g1556 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Clacu10g1556 1035 Gene3D - 462 657 IPR023299 GO:0000166(InterPro)
Clacu10g1556 1035 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1014 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Clacu10g1556 1035 SUPERFAMILY HAD-like 451 857 IPR036412 -
Clacu10g1556 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 51 IPR024750 GO:0005516(InterPro)
Clacu10g1556 1035 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Clacu10g1556 1035 Pfam Cation transporting ATPase, C-terminus 837 1011 IPR006068 -
Clacu10g1556 1035 SFLD C1.7: P-type atpase like 434 804 - -
Clacu10g1556 1035 FunFam Calcium-transporting ATPase 214 335 - -
Clacu10g1556 1035 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Clacu10g1556 1035 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Clacu10g1556 1035 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Clacu10g1556 1035 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Clacu10g1556 1035 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Clacu10g1556 1035 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Clacu10g1556 1035 Pfam Cation transporter/ATPase, N-terminus 118 184 IPR004014 -
Clacu10g1556 1035 FunFam Calcium-transporting ATPase 18 78 - -
Clacu10g1556 1035 PANTHER CATION TRANSPORTING ATPASE 78 1013 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Clacu10g1556 1035 FunFam Calcium-transporting ATPase 769 1015 - -
Clacu10g1556 1035 Gene3D - 167 1011 - -
Clacu10g1556 1035 Gene3D - 449 797 IPR023214 -
Clacu10g1556 1035 FunFam Calcium-transporting ATPase 462 657 - -
Clacu10g1556 1035 Gene3D - 18 79 - -
Clacu10g1556 1035 CDD P-type_ATPase_Ca_PMCA-like 142 885 - -
Clacu10g1556 1035 FunFam Calcium-transporting ATPase 650 797 - -
Clacu10g1556 1035 Pfam haloacid dehalogenase-like hydrolase 644 764 - -
Clacu10g1556 1035 Gene3D - 134 335 - -
Clacu10g1556 1035 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu10g1556 1035 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu10g1556 1035 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu10g1556 1035 Pfam E1-E2 ATPase 235 430 - -
Clacu10g1556 1035 Pfam Cation transport ATPase (P-type) 508 593 - -
Clacu10g1556 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166(InterPro)
Clacu10g1556 1035 NCBIfam HAD-IC family P-type ATPase 718 840 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu10g1556 1035 NCBIfam HAD-IC family P-type ATPase 550 697 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu10g1556 1035 NCBIfam HAD-IC family P-type ATPase 204 483 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0816 Clacu-Chr1:8927356 Clacu10g1556 Clacu-Chr10:28819254 0.00E+00 dispersed
Clacu01g1830 Clacu-Chr1:30451532 Clacu10g1556 Clacu-Chr10:28819254 0.00E+00 dispersed
Clacu10g1556 Clacu-Chr10:28819254 Clacu11g1343 Clacu-Chr11:23006038 1.50E-265 dispersed
Clacu10g1556 Clacu-Chr10:28819254 Clacu05g2255 Clacu-Chr5:30965133 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1556 K01537 - csv:101206199 1867.82