Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1556 | ATGAATATGGAGCAGTATCTTCTGAAGGACTTCGAAGTTGAGCCAAAACATCCTTCAGAGGAAGCCTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAGAAATCGACGACGGAGGTTCCGAAATGTTGCAGATCTCGATAAACGCTCTGAGGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAGTTTATTGATGCCGTGAATCGAGATGAGTACCATCTGTCAGATGAGGCTAGGAGAGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTTGCACTAGACACAGGTGTCAGTGAAAAAGATACATCCAAGAGACAAGAGATTTATGGTTACAATTGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTATGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGTATTGCCACAGAAGGGTGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATATTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAACTGATGGAAACTCTCAGTGAGGGAGGAGAAGACGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCGGTCAGTTGCATTTGCACAGATAAGACTGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTATGTGAAAATTTTATGGAGAATAAAGACCATAGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGATGTTTTAGGCATATTTTTGCAGTCCATATTTCAAAATACCAGCTGCGAAGTGACTAAAGATAAAGAGGGGAAGAACTCAATTGTTGGTGGAACACCAACGGAATCAGCACTATTGGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATCTATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCACTAGTTTTGCCAATGAAGCCTTGAGGACACTTTGCTTAGCCTTCAAAGATATAGAGGACTCCGGTGACAAATCAATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAGTTATACCAAAACTGCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAGTACACATTGGTTAACAATTTGCGGAGTATGGGTGAGGTTGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGAACTGAGGTGGCCAAAGAAAATGCCGATGTGATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTCGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATCTATCAACTTGCTGTACTGGCAGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATTGAAAAGATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGGGTTTCAAATAATAATAATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTATGGGGACTGAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTCGTGTTGAAGTTCATCCCTGTTCGTAAAGAAGTATTCACAGCCCAACATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA | 3108 | 41.7 | MNMEQYLLKDFEVEPKHPSEEALRRWRSAVSIVRNRRRRFRNVADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHLSDEARRAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVSVALDTGVSEKDTSKRQEIYGYNCYTEKPSRPFWVYVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSVSCICTDKTGTLTTNHMIVSRAWVCENFMENKDHRSVDKLKSEISEDVLGIFLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIYLTEEKVNNATNVITSFANEALRTLCLAFKDIEDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPNFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLNGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVRKEVFTAQHDGYEPIPSGPELA | 1035 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28819254 | 28832834 | - | ClG42_10g0155600.10 | Clacu10g1556 | 260180 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1556 | 1035 | SFLD | p-type atpase | 434 | 804 | IPR044492 | - | |
| Clacu10g1556 | 1035 | SMART | Cation_ATPase_N_a_2 | 115 | 189 | IPR004014 | - | |
| Clacu10g1556 | 1035 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 118 | 1014 | IPR023298 | - | |
| Clacu10g1556 | 1035 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 454 | 460 | IPR018303 | - | |
| Clacu10g1556 | 1035 | Gene3D | - | 462 | 657 | IPR023299 | GO:0000166(InterPro) | |
| Clacu10g1556 | 1035 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 111 | 1014 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Clacu10g1556 | 1035 | SUPERFAMILY | HAD-like | 451 | 857 | IPR036412 | - | |
| Clacu10g1556 | 1035 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 8 | 51 | IPR024750 | GO:0005516(InterPro) | |
| Clacu10g1556 | 1035 | SUPERFAMILY | Calcium ATPase, transduction domain A | 237 | 333 | IPR008250 | - | |
| Clacu10g1556 | 1035 | Pfam | Cation transporting ATPase, C-terminus | 837 | 1011 | IPR006068 | - | |
| Clacu10g1556 | 1035 | SFLD | C1.7: P-type atpase like | 434 | 804 | - | - | |
| Clacu10g1556 | 1035 | FunFam | Calcium-transporting ATPase | 214 | 335 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | P-type cation-transporting ATPase superfamily signature | 283 | 297 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | P-type cation-transporting ATPase superfamily signature | 752 | 771 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | P-type cation-transporting ATPase superfamily signature | 452 | 466 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | P-type cation-transporting ATPase superfamily signature | 776 | 788 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | P-type cation-transporting ATPase superfamily signature | 672 | 682 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 661 | - | - | |
| Clacu10g1556 | 1035 | Pfam | Cation transporter/ATPase, N-terminus | 118 | 184 | IPR004014 | - | |
| Clacu10g1556 | 1035 | FunFam | Calcium-transporting ATPase | 18 | 78 | - | - | |
| Clacu10g1556 | 1035 | PANTHER | CATION TRANSPORTING ATPASE | 78 | 1013 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Clacu10g1556 | 1035 | FunFam | Calcium-transporting ATPase | 769 | 1015 | - | - | |
| Clacu10g1556 | 1035 | Gene3D | - | 167 | 1011 | - | - | |
| Clacu10g1556 | 1035 | Gene3D | - | 449 | 797 | IPR023214 | - | |
| Clacu10g1556 | 1035 | FunFam | Calcium-transporting ATPase | 462 | 657 | - | - | |
| Clacu10g1556 | 1035 | Gene3D | - | 18 | 79 | - | - | |
| Clacu10g1556 | 1035 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 885 | - | - | |
| Clacu10g1556 | 1035 | FunFam | Calcium-transporting ATPase | 650 | 797 | - | - | |
| Clacu10g1556 | 1035 | Pfam | haloacid dehalogenase-like hydrolase | 644 | 764 | - | - | |
| Clacu10g1556 | 1035 | Gene3D | - | 134 | 335 | - | - | |
| Clacu10g1556 | 1035 | PRINTS | H+-transporting ATPase (proton pump) signature | 752 | 768 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1556 | 1035 | PRINTS | H+-transporting ATPase (proton pump) signature | 611 | 629 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1556 | 1035 | PRINTS | H+-transporting ATPase (proton pump) signature | 784 | 809 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1556 | 1035 | Pfam | E1-E2 ATPase | 235 | 430 | - | - | |
| Clacu10g1556 | 1035 | Pfam | Cation transport ATPase (P-type) | 508 | 593 | - | - | |
| Clacu10g1556 | 1035 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 458 | 662 | IPR023299 | GO:0000166(InterPro) | |
| Clacu10g1556 | 1035 | NCBIfam | HAD-IC family P-type ATPase | 718 | 840 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1556 | 1035 | NCBIfam | HAD-IC family P-type ATPase | 550 | 697 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Clacu10g1556 | 1035 | NCBIfam | HAD-IC family P-type ATPase | 204 | 483 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g0816 | Clacu-Chr1:8927356 | Clacu10g1556 | Clacu-Chr10:28819254 | 0.00E+00 | dispersed | |
| Clacu01g1830 | Clacu-Chr1:30451532 | Clacu10g1556 | Clacu-Chr10:28819254 | 0.00E+00 | dispersed | |
| Clacu10g1556 | Clacu-Chr10:28819254 | Clacu11g1343 | Clacu-Chr11:23006038 | 1.50E-265 | dispersed | |
| Clacu10g1556 | Clacu-Chr10:28819254 | Clacu05g2255 | Clacu-Chr5:30965133 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1556 | K01537 | - | csv:101206199 | 1867.82 |