Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1562 ATGGTACCCTCCCAGGCCATCCAAATTCCGGAGGACAACATAGTCTTGGTTGCAGTTTCCATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACCCGAACCCGGTGCTTGTAGTGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAATGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGAGCTAAACATAAGAGGAAATTTCCGGGTAGTGCTGATCTGTCCGCAGATGTGGTATACAGGACCATAATTATTGAGTTCATGAGCGCCTGTAAATGGTCTGATGATATTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCTGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTACGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCCCAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCGAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCATCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGGCAGATCATGGGAAAGTGGTCGAAACACATACAAGTCATGGTGGTGATCCCAGTGAGAGATTTGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGACCCGATTCATTGGACATCTCTCGTCTCTGTTCTTCCTAGTGGACTTTCTCGTACAGCTGAGGTTACAAAAACTGAAACGTCTTCAACTTACACTTTGTTTCGGCCTGAGGAATAA 1461 45.65 MVPSQAIQIPEDNIVLVAVSMASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRAKHKRKFPGSADLSADVVYRTIIIEFMSACKWSDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRTPGPDYVNSINYGAGDDQATESEFVPSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTAHPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKADHGKVVETHTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPSGLSRTAEVTKTETSSTYTLFRPEE 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28891926 28897147 - ClG42_10g0156200.10 Clacu10g1562 260186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1562 486 Coils Coil 361 389 - -
Clacu10g1562 486 SMART rav1_2 138 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1562 486 ProSiteProfiles AP2/ERF domain profile. 119 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1562 486 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 63 323 - -
Clacu10g1562 486 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1562 486 MobiDBLite consensus disorder prediction 292 312 - -
Clacu10g1562 486 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1562 Clacu-Chr10:28891926 Clacu11g0957 Clacu-Chr11:10166870 3.30E-37 dispersed
Clacu10g1562 Clacu-Chr10:28891926 Clacu05g2399 Clacu-Chr5:32311312 5.60E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48515 PF00847 AP2 1.50E-05 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1562 K09285 - csv:101206434 745.732