Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1569 ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAAACCCCGACTCCGCCACTGCCACCGTCACCGCCCTGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAGTGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGTCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCGATTCAGAACTCACAGCCATCCCAAGTCGGAGCGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 696 53.3 MADADQFPRRKPLGNKRASAANRNPDSATATVTALAPCGACKFLRRKCVSGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAIQNSQPSQVGALQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28966015 28968126 - ClG42_10g0156900.10 Clacu10g1569 260193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1569 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Clacu10g1569 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 191 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Clacu10g1569 231 MobiDBLite consensus disorder prediction 1 26 - -
Clacu10g1569 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Clacu10g1569 231 Coils Coil 117 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g0797 Clacu-Chr9:7180340 Clacu10g1569 Clacu-Chr10:28966015 9.90E-35 dispersed
Clacu10g1569 Clacu-Chr10:28966015 Clacu11g0751 Clacu-Chr11:7346825 4.90E-23 dispersed
Clacu10g1569 Clacu-Chr10:28966015 Clacu06g0035 Clacu-Chr6:567627 2.70E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48517 PF03195 LOB 1.70E-37 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1569 - - - 0.0