Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1575 ATGCGAACATCTGACAGAAATCAACACCGCAAACTGTTCCGCATATGGATAAAACAGTCTCCAGAATTCCATTTCCATGTTATTAACAAAAGCTCGAGAAGAATCCACGGCAACCCTCAGGAAGATTGCCAGAGTTTTCTTCGTTTAACTGAGTTTGAAGCTAAGTGCTATGTTCTTAAATCCAACAACCCCTGTAACACCCAAGGGTACATAGATTATCTTTACATTTTCTATTGTCAGTATGGAAGTTTTAGCATCCTGGGCTACACTCTGTTGTTTCTGTGGCTTCTTGTGTTGTTCTATCTTTTGGGTAATACTGCTTCTGAATACTTTTGCTCTTCCCTTGAGAGCTTGTCAAAATTGTTGAATCTATCCCCAACAATTGCTGGTGTTACTCTGCTTTCTCTTGGCAATGGGGCACCTGATGTTTTTGCCAGCCTTGTTGCTTTCATGGGGGATGGAACTAGTGATATTGGCTTGAATACTGTTCTCGGCGGAGCCTCGTTTGTTACCTGCGTCGTCGTTGGAATCATTAGCATTTTGCTGCGTCGGCAATGGATTAAGGTGAATAGGTCTGCCTTCATTCGAGATGTTTTGTTCTTCCTCTTGGTTCTTTTGTCTGTTTTCCTGATATTGCTTCATGGTCATATCAATCTGTGGGGTTCCATTGGCTTTTCTTCCATGTATATTATTTATGTTTTGGTTGTTTATGTCTCCCATGCCCAATGGTTGAGTTTTAGAAGTGAAATCTGTGAACCCCTTTTGAAAGAACCACCAAAGGATGAGTTTGAGGGTCGAAATGAACCACAGGACAACGGTGACGATGATGACAACAATGATGATGTTAGAATTGATGTATATGATCTCTGTTTTTGTCCAAGATTATCACCTTCTTGTCTTTTTTTCCTTCGGATTCTTGAGGTCCCTCTTTACTTGCCTAGAAGATTGACAATTCCAGCCATTGCTGAAGAAAACTGGTCTAGACCATTTGCTGTTGCTTCAGTGACATTGGCCCCCCTTCTCTTATCTCTTCTATGGACATTTCACGACCAGAGTGATCAACCGTCACAATCGAACCTTATCATCTGTGTCATCGCTTCGTTGCTTGGAGTTAGTTTTGGAATTGTTGCATTTGCAACGACTGAGAATTCAAGCCCACCAAAGAAGTGCCTGTTCCCTTGGCTTGCAGCTGGCTTCACCATGAGTTTAACATGGAGTTACATTGTAGCTCAGGAACTGGTAGGCCTATTAGTTTCACTTGGCTACATAATGGGTATAAGCCCTTCAATCCTAGGACTTACCTTCCTTGCTTGGGGAAACTCTCTAGGGGATTTGGTTACCAATGTGACCATGGCTTTGAACGGCGGGCAGCGAGGCGCCCAAATCGCCATATCCGGTTGCTACGCTGGCCCCATCTTCAACACTCTGTTCGGCCTTGGGATATCTCTTGTTGGCGCTTCGTGGAAGAAGTATCCGCAGCCGGTCGCCATCCCTCCCGACCCTTATGTCATGGAGACATTGGGGCTGTTGGTAGGAGGGTTGCTTTGGGCACTTGTGGCTTTGCCAAGGAGAGAGATGAGGCTTGATGCTGTCTTGGGAGGAGGCCTTCTGGCTATCTATTTAACCTCTTTGCTCTTAAGGCTTTTGCAAGCTTTTGGTTCTTCCCATTAG 1671 44.46 MRTSDRNQHRKLFRIWIKQSPEFHFHVINKSSRRIHGNPQEDCQSFLRLTEFEAKCYVLKSNNPCNTQGYIDYLYIFYCQYGSFSILGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKLLNLSPTIAGVTLLSLGNGAPDVFASLVAFMGDGTSDIGLNTVLGGASFVTCVVVGIISILLRRQWIKVNRSAFIRDVLFFLLVLLSVFLILLHGHINLWGSIGFSSMYIIYVLVVYVSHAQWLSFRSEICEPLLKEPPKDEFEGRNEPQDNGDDDDNNDDVRIDVYDLCFCPRLSPSCLFFLRILEVPLYLPRRLTIPAIAEENWSRPFAVASVTLAPLLLSLLWTFHDQSDQPSQSNLIICVIASLLGVSFGIVAFATTENSSPPKKCLFPWLAAGFTMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVTNVTMALNGGQRGAQIAISGCYAGPIFNTLFGLGISLVGASWKKYPQPVAIPPDPYVMETLGLLVGGLLWALVALPRREMRLDAVLGGGLLAIYLTSLLLRLLQAFGSSH 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29024388 29026612 - ClG42_10g0157500.10 Clacu10g1575 260199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1575 556 MobiDBLite consensus disorder prediction 258 279 - -
Clacu10g1575 556 Gene3D - 124 250 IPR044880 -
Clacu10g1575 556 Gene3D - 330 548 IPR044880 -
Clacu10g1575 556 Pfam Sodium/calcium exchanger protein 395 548 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1575 556 Pfam Sodium/calcium exchanger protein 93 237 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu10g1575 556 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 30 554 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1545 Clacu-Chr3:29039197 Clacu10g1575 Clacu-Chr10:29024388 4.10E-112 dispersed
Clacu03g1723 Clacu-Chr3:31061712 Clacu10g1575 Clacu-Chr10:29024388 1.30E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1575 K13754 - csv:101204766 915.605