Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1595 ATGGTTATGGCTACCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTTGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCATCGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAGGAAGAGTTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA 669 42.6 MVMATDSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMSKKRKGGVDEESVETERRRRRFDNNGVATVI 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29270778 29272036 - ClG42_10g0159500.10 Clacu10g1595 260219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1595 222 MobiDBLite consensus disorder prediction 187 215 - -
Clacu10g1595 222 MobiDBLite consensus disorder prediction 158 222 - -
Clacu10g1595 222 Gene3D - 10 216 - -
Clacu10g1595 222 CDD REC_typeA_ARR 11 148 - -
Clacu10g1595 222 Pfam Response regulator receiver domain 74 142 IPR001789 GO:0000160(InterPro)
Clacu10g1595 222 Coils Coil 161 181 - -
Clacu10g1595 222 SUPERFAMILY CheY-like 8 166 IPR011006 -
Clacu10g1595 222 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Clacu10g1595 222 MobiDBLite consensus disorder prediction 164 186 - -
Clacu10g1595 222 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 196 IPR045279 GO:0009736(InterPro)
Clacu10g1595 222 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0453 Clacu-Chr4:16879093 Clacu10g1595 Clacu-Chr10:29270778 1.20E-54 dispersed
Clacu05g2882 Clacu-Chr5:35979440 Clacu10g1595 Clacu-Chr10:29270778 1.00E-50 dispersed
Clacu06g1772 Clacu-Chr6:28263442 Clacu10g1595 Clacu-Chr10:29270778 1.00E-38 dispersed
Clacu07g0533 Clacu-Chr7:6887029 Clacu10g1595 Clacu-Chr10:29270778 1.70E-40 dispersed
Clacu08g0725 Clacu-Chr8:17094516 Clacu10g1595 Clacu-Chr10:29270778 1.60E-39 dispersed
Clacu10g1595 Clacu-Chr10:29270778 Clacu05g2695 Clacu-Chr5:34526605 1.90E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48520 PF00072 Response_reg 1.80E-13 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1595 K14492 - csv:101220810 308.531