Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g1595 | ATGGTTATGGCTACCGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTTGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCATCGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAGGAAGAGTTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGGTGATTTGA | 669 | 42.6 | MVMATDSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMSKKRKGGVDEESVETERRRRRFDNNGVATVI | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29270778 | 29272036 | - | ClG42_10g0159500.10 | Clacu10g1595 | 260219 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g1595 | 222 | MobiDBLite | consensus disorder prediction | 187 | 215 | - | - | |
Clacu10g1595 | 222 | MobiDBLite | consensus disorder prediction | 158 | 222 | - | - | |
Clacu10g1595 | 222 | Gene3D | - | 10 | 216 | - | - | |
Clacu10g1595 | 222 | CDD | REC_typeA_ARR | 11 | 148 | - | - | |
Clacu10g1595 | 222 | Pfam | Response regulator receiver domain | 74 | 142 | IPR001789 | GO:0000160(InterPro) | |
Clacu10g1595 | 222 | Coils | Coil | 161 | 181 | - | - | |
Clacu10g1595 | 222 | SUPERFAMILY | CheY-like | 8 | 166 | IPR011006 | - | |
Clacu10g1595 | 222 | SMART | REC_2 | 9 | 148 | IPR001789 | GO:0000160(InterPro) | |
Clacu10g1595 | 222 | MobiDBLite | consensus disorder prediction | 164 | 186 | - | - | |
Clacu10g1595 | 222 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 196 | IPR045279 | GO:0009736(InterPro) | |
Clacu10g1595 | 222 | ProSiteProfiles | Response regulatory domain profile. | 10 | 153 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu04g0453 | Clacu-Chr4:16879093 | Clacu10g1595 | Clacu-Chr10:29270778 | 1.20E-54 | dispersed | |
Clacu05g2882 | Clacu-Chr5:35979440 | Clacu10g1595 | Clacu-Chr10:29270778 | 1.00E-50 | dispersed | |
Clacu06g1772 | Clacu-Chr6:28263442 | Clacu10g1595 | Clacu-Chr10:29270778 | 1.00E-38 | dispersed | |
Clacu07g0533 | Clacu-Chr7:6887029 | Clacu10g1595 | Clacu-Chr10:29270778 | 1.70E-40 | dispersed | |
Clacu08g0725 | Clacu-Chr8:17094516 | Clacu10g1595 | Clacu-Chr10:29270778 | 1.60E-39 | dispersed | |
Clacu10g1595 | Clacu-Chr10:29270778 | Clacu05g2695 | Clacu-Chr5:34526605 | 1.90E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48520 | PF00072 | Response_reg | 1.80E-13 | CL0304 | Clacu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g1595 | K14492 | - | csv:101220810 | 308.531 |