Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1614 ATGAGGAAAGAGGGAGGGTTTATGAAGAAAATGGGAAAGTCAATATGGTTCAAAGTTTTGGTGGGCTTTTTTGGTTTTGAGCTCATCGATGAGTTGGAAGCTGGGGAGTTGATAGCTGAAGTTTTGATAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAGGAGTCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTCGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGTTAGAGTTACCTTCTCGTAATGCCCGCCTACTTTTGCCACCTTTGAGCTCCACTCAGTCCTCCTCAGATGGTGACACCTCTGACTGTTCTTTCAAATTTTGGAAAGGCAGCGGGAAAGATTCTGAGTTTTCCATGGAACAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAGGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1662 44.71 MRKEGGFMKKMGKSIWFKVLVGFFGFELIDELEAGELIAEVLITVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLELPSRNARLLLPPLSSTQSSSDGDTSDCSFKFWKGSGKDSEFSMEQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29522068 29530486 + ClG42_10g0161400.10 Clacu10g1614 260238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1614 553 Gene3D - 220 272 - -
Clacu10g1614 553 SUPERFAMILY Leucine zipper domain 221 264 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1614 553 PANTHER TRANSCRIPTION FACTOR TGA9 179 553 - -
Clacu10g1614 553 Pfam bZIP transcription factor 220 261 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1614 553 SMART brlzneu 217 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1614 553 MobiDBLite consensus disorder prediction 148 223 - -
Clacu10g1614 553 CDD bZIP_HBP1b-like 221 272 - -
Clacu10g1614 553 MobiDBLite consensus disorder prediction 183 198 - -
Clacu10g1614 553 ProSiteProfiles DOG1 domain profile. 286 550 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu10g1614 553 FunFam BZIP family transcription factor 220 269 - -
Clacu10g1614 553 Coils Coil 240 267 - -
Clacu10g1614 553 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 219 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1614 553 Pfam Seed dormancy control 304 376 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu10g1614 553 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 224 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1614 553 MobiDBLite consensus disorder prediction 148 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1229 Clacu-Chr8:22184320 Clacu10g1614 Clacu-Chr10:29522068 6.20E-127 dispersed
Clacu10g1614 Clacu-Chr10:29522068 Clacu10g1719 Clacu-Chr10:30697355 4.70E-80 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48521 PF14144 DOG1 1.00E-28 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1614 K14431 - csv:101219149 821.617