Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1623 ATGGGTTTGGAAATTGTGGATCCAAACACTTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCCCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATATGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCCGAAGAATGGAATCCAAGTATCAATCAGGTGCTCATGATCACTATAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTTCATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAGATTTGCATCCGCACTTGGCTGATTTTGGTCTAGCAACACATCAGAAATACCTGAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGCCCACACTGTATTGGAAATGAATTATACAGAGCAGCTGCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTACTGATGAGTCTGGCACACCATCTAGGTTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAGAAATAGACCATCTTTTTCTGATATAGTTATGGACTTGGAATCAATTTGGGAGAATAGAAGGGGTCTAGAATCTGTCACCCCTATACAACCTGACTTGTGTGGTAGGCTTAGTGATGCTAATGAACATGATTACGTGTATCGAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAATTATCTGATGCAGATAGGTGTGCTTTGAATGAGTGGTTTGATTTCTCAACTGACCATTCAGCATACCGCCCAACACTTACTTACGGATCCTTCTCCACCTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCGTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGAACATCATTTTCCACAAGAAGTCCTGCAGATGCATTAACGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGATTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAGTTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGGAATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAGTGCCGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGACCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTGAAGCCAGCCGTCACTGCAGAACCCGAGATAACGGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCGGGAATGTGCTCGAAGCGACTTGCGACAGAAGCGGCAGCTCGGGGAAGCAACGATAACATCACGGTAGTTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATATATTAA 1824 44.08 MGLEIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHMELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITIELAKALQYLHNLGIVHRDVKPANVLLDKDLHPHLADFGLATHQKYLKEISAENWKSSGKPTGGFYKKNMAHTVLEMNYTEQLLTAAIVSDGLRPALPTDESGTPSRLLSLIRRCWDANPRNRPSFSDIVMDLESIWENRRGLESVTPIQPDLCGRLSDANEHDYVYREDINWSNQGEHCSQKLSDADRCALNEWFDFSTDHSAYRPTLTYGSFSTCGRRETMEDSHFLLRHFCSEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLRTSFSTRSPADALTEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALVVRDRLFVANAGDCRTILCRAGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVVVVFLHPVSTVERIY 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29581419 29592351 - ClG42_10g0162300.10 Clacu10g1623 260247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1623 607 Gene3D - 330 602 IPR036457 -
Clacu10g1623 607 SUPERFAMILY PP2C-like 332 599 IPR036457 -
Clacu10g1623 607 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 331 601 - -
Clacu10g1623 607 Pfam Protein kinase domain 33 177 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1623 607 ProSiteProfiles Protein kinase domain profile. 30 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1623 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1623 607 SUPERFAMILY Protein kinase-like (PK-like) 24 282 IPR011009 -
Clacu10g1623 607 SMART PP2C_SIG_2 355 597 IPR001932 -
Clacu10g1623 607 Pfam Protein phosphatase 2C 341 590 IPR001932 -
Clacu10g1623 607 SMART serkin_6 30 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1623 607 CDD PP2Cc 341 597 IPR001932 -
Clacu10g1623 607 ProSiteProfiles PPM-type phosphatase domain profile. 340 597 IPR001932 -
Clacu10g1623 607 PANTHER PROTEIN PHOSPHATASE 308 596 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu10g1623 607 Gene3D Transferase(Phosphotransferase) domain 1 17 280 - -
Clacu10g1623 607 SMART PP2C_4 330 595 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1623 Clacu-Chr10:29581419 Clacu11g1011 Clacu-Chr11:12123125 1.20E-25 dispersed
Clacu10g1623 Clacu-Chr10:29581419 Clacu09g0481 Clacu-Chr9:4141035 6.40E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73897 PF00481 PP2C 1.90E-67 CL0238 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1623 - - - 0.0