Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1624 ATGGCAATAGACCAGGCCGAGCTTAGCACTGAGCAGGTTCTTACAAGGGACATTCCATGGGAGACATACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGATATGATAACAGACCAGAGAGTTACAGGGCACAGTTGTTGGATGATGATGGTCCAGCATATGTTCGGGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACAGTGGAATATGTTCTAGCATTAATCGATGAAATGCTTACAGCAAACCCAAAAAGAGCAAGATTGTTCCACGATCCTTCTCTTGCAAGCGAAGATGCTTATGAACCTTTCCTAAGATTGCTTTGGAAGGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTCTGATAGTGAGTGCTAGACAGAAAACTCATGATGGAAATTTTGCAAATGATGATGCCTTGAACTCCAAGAGCAAAATTACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCAACTCTGTTGAAAGAACCAAAGGTCAGATCCTCCTTCGTCCAGACAGATGGAGTGAAATTGCTTATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTATTCAGCTTCTATATGAAACTTGTCTTTGTGTTTGGCTCTTATCATATTATGAGCCGGCAATTGAATTCTTGGCCACTTCTAGGACCCTTCCAAGACTCATCGATGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGAGTTATTATTTTGACCTTGAGGAACTTACTCTACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTTGGACTACCACAAGTTGTTCAAAGTTTGAAATCACAAGCCTGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTAGAAGAGGGGCTGAAAGAAAACATCAAGAAACTAAGTTCTTTCGACAAGTATAAGCAAGAAGTCCTTCTCGGGCATCTTGACTGGTCTCCCATGCACAAAGATGTAAATTTCTGGCGAGAAAATATTACAAGCTTCGAAGAGAACGACTTGAAGATATTGAGGGTCCTAATCACCATTCTGGACAGTTCCAGTGACCCAAGGGCTTTGGCAGTTGCTTGTTTTGATCTTTCACAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAGGTTACCAAATATGCCCTCCTTTGCATTCAAAGGCTCTTTCTAGGTGCCAAGTATGCTAGCTTTCTGCAGGCTTAA 1365 42.05 MAIDQAELSTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDPSLASEDAYEPFLRLLWKGNWFIQEKSCKILALIVSARQKTHDGNFANDDALNSKSKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQTDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVIILTLRNLLYKGTFGAQMVGLGLPQVVQSLKSQAWSDEDLLEALNQLEEGLKENIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENITSFEENDLKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29595788 29603394 + ClG42_10g0162400.10 Clacu10g1624 260248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1624 454 CDD VATPase_H 4 448 - -
Clacu10g1624 454 FunFam V-type proton ATPase subunit H 345 446 - -
Clacu10g1624 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
Clacu10g1624 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037(InterPro)
Clacu10g1624 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Clacu10g1624 454 Gene3D - 345 446 IPR038497 -
Clacu10g1624 454 Pfam V-ATPase subunit H 6 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu10g1624 454 PIRSF V-ATP_synth_H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu10g1624 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu10g1624 454 Gene3D - 6 333 IPR011989 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1624 K02144 - csv:101217015 877.47