Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1627 ATGGGATTCTTAGAATGTCTTGGCCATTTCTTTCAAAATGCAAATCCTTACATCGCAGTCATCTCCCTCCAATTCGGCTATGCCGGAATGAATATCATCTCCACCGTCTCCCTCAACCGGGGTATGAGCCACTACGTCCTCGTTGTCTACCGCCATGCCTTTGCCACCGCCGTCATGGCACCCTTTGCTCTTGTTCTCGAGAGGAAAGTAAGACCCAAGATTACATTTAAGATTTTCATTCAGATGTTTGTTCTTGCTCTACTTGGGCCACTGATTGATCAAAACTTCTACTATGTGGGGCTGAAAATGACATCCCCAACTTTCTCTTGTGCCATAAGCAACATGCTTCCTTCAATGACATTTGTGATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAAAGAGTGAGATGCCAAGCAAAGTTGTTTGGAACAGTAATGACGGTAGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAAATTCTTCTGGACCGGGCACGGCCACCAACGGCACGCACCACCTACTGCAGATGCGGCAGCACTCAACCACCACAACGACGGAGAGTTCATCAAAGGCTCAATCTTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTCATAACTTTGAGAAAATACACCGCTCATCTTTCTCTCACCACTTTGGTTTGCTTTTTGGGAACCCTTCAGGCCATTGTTGTCACCCTTGCTATGGAGCACCACCCCTCTGCTTGGGCTATCGGCTGGGACTTGAACCTTCTTGCCGCCGCATATGCAGGGATTGTGACTTCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAGGGGCCAGTTTTTGTAACAGCTTTTAGCCCTTTGATGATGGTGATTGTTGCTTTCATGGGATCTCTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGTTGATTGTGATAGGGCTGTACTCTGTTTTGTGGGGAAAGTACAAAGAAAGCAAAGAGAAAGAAGATGAAGAGATTGTTGAATTAGCAATGAAAGGTGGAGATCAATTGCCTGTAATAAATGAAGGCATTGAAACAATTCAAAAGAAAGAGGGTTTGGCCATTACTATTCCACCCCAAGCTCATGGAGAAGAGGCTTCAAGACACTAA 1179 45.38 MGFLECLGHFFQNANPYIAVISLQFGYAGMNIISTVSLNRGMSHYVLVVYRHAFATAVMAPFALVLERKVRPKITFKIFIQMFVLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRCQAKLFGTVMTVVGAMLMTFYKGSVIKFFWTGHGHQRHAPPTADAAALNHHNDGEFIKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLAMEHHPSAWAIGWDLNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSLILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKEDEEIVELAMKGGDQLPVINEGIETIQKKEGLAITIPPQAHGEEASRH 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29624319 29626533 - ClG42_10g0162700.10 Clacu10g1627 260251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1627 392 Pfam EamA-like transporter family 196 334 IPR000620 GO:0016020(InterPro)
Clacu10g1627 392 Pfam EamA-like transporter family 20 157 IPR000620 GO:0016020(InterPro)
Clacu10g1627 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Clacu10g1627 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 338 - -
Clacu10g1627 392 PANTHER WAT1-RELATED PROTEIN 18 346 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0634 Clacu-Chr4:20021859 Clacu10g1627 Clacu-Chr10:29624319 6.40E-125 dispersed
Clacu06g1087 Clacu-Chr6:19980089 Clacu10g1627 Clacu-Chr10:29624319 1.10E-59 dispersed
Clacu08g0702 Clacu-Chr8:16778760 Clacu10g1627 Clacu-Chr10:29624319 2.40E-87 dispersed
Clacu08g0847 Clacu-Chr8:18509495 Clacu10g1627 Clacu-Chr10:29624319 1.30E-59 dispersed
Clacu08g1626 Clacu-Chr8:26046610 Clacu10g1627 Clacu-Chr10:29624319 2.20E-63 dispersed
Clacu09g2040 Clacu-Chr9:35219112 Clacu10g1627 Clacu-Chr10:29624319 2.50E-66 dispersed
Clacu10g1627 Clacu-Chr10:29624319 Clacu11g1504 Clacu-Chr11:26195377 9.80E-125 dispersed
Clacu10g1626 Clacu-Chr10:29619309 Clacu10g1627 Clacu-Chr10:29624319 1.00E-26 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1627 - - - 0.0