Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu10g1628 | ATGGATATCTTTATTCCGGCGACTTTCTTCCTCACTTTCCTGATCTCTCTTTTCCTTTTCCTTTACTTCTTATCTTCAACGAAGAAATCTCAAAGCCATGAAGGTTTTAAAAACTACCCCATCGTCGGAGTATTGCCCCTGTTCTTATTAAACCGCCACCGTTTTCTGGACTGGACGACGGAGGTCCTCCGCAATTGCAAGACCAACACAGCGGTGATCCGGCGGCCAGGTGACGTCTGTGGCGTTATGACGGCAAACCCACTTGTGGTAGAGCACATTCTGAAGACCCAATTTAAGAATTACCCAAAAGGGGAACGTTTGGTTTCGATTTTGGAGGATTTTTTGGGGAGTGGGATTTTCAATTCTGACGGCGAAATTTGGAGATTTCAAAGGAAAATGGTGAGTTATGAGTTCAATACGAAATCGCTGAGGAATTTTGTTATGGAGAATGTTAAAGTTGAGATACAGAGGAAGTTGATTCCTGTTTTGGAGAAGGCGGCTTCGTCGTCTGAAACAGAGTGTGTTTTGGATTTGCAAAATGTTTTTGAGCGATTTGCGTTTGATAATGTTTGTAAATTGTCTTTCAATTTTGATTCCGGTTGTCTCGGCGGCGAGGATAACGCCGGCGCCGACTTCATGCGCGCTTTTGAGACCGACGCCACCCTCACATCCGGCAGGTTTAGGTATGCTATCCCTCATTGGTACAAGGTGAAGAGATTTTTCAACTTGGGATCAGAAAGAAACCTAAAGAAATCCATATCAATTGTTCACAAATTTGCAGATGAAATCATACGCTCAAGAATGGAAGAGAAAACAACCCAAAATAAGGATCAAGATTTATTGTCACGATTCATGGCAAACGAAGATAATTCCCCAAAATTCCTCCGAGACATAATCATAAGCTTTATCCTCGCCGGTGGAGACACCACTTCTTCAGCTCTAACATGGTTCTTTTGGATCTTATCCACCCGACCTGATATCGAACAAAACATCCTTGCAGAGCTTGAAAAAATAAGATCAAGAACACGTAAGGAAATCGGAGAAATGTATAGCTTCGACGAACTCCAAGACATGCACTATCTTCAAGCAGCATTGTCCGAGACTCTCCGGTTATACCCCCCAGTCCCGATTGACTCAAAAGCTTGCCAACGTGACGATATCTTACCCGACGGGACGTTTATTAGGAAGAGTTGGTTTGTGATGTACCATGCATATGCAATGGGAAGAATGAAGAGCAAATGGGGGGAAAATTGTGAGGAAGTTTTGCCAGAAAGGTGGTTAGAAAATGGGGTTTGTAGGATTGAGAGTCCATTTCAGTTTCCTATATTTCATGGAGGGCCAAGGATGTGTCCAGGAAAAGATATGGCTTATATTCAGATGAAGTCCATAGTTGCAGCTGTGATCCAGAAGTTTGAAGTAAAAATGGTAGAAAAGAAGACTCCAAAGCATTTGTTATCACTGACATTAAGGATGGAGAATGGTTTGCAAGTGATGGTCAAAAAGAGGCCCATATATAACGTAAATTAG | 1527 | 42.5 | MDIFIPATFFLTFLISLFLFLYFLSSTKKSQSHEGFKNYPIVGVLPLFLLNRHRFLDWTTEVLRNCKTNTAVIRRPGDVCGVMTANPLVVEHILKTQFKNYPKGERLVSILEDFLGSGIFNSDGEIWRFQRKMVSYEFNTKSLRNFVMENVKVEIQRKLIPVLEKAASSSETECVLDLQNVFERFAFDNVCKLSFNFDSGCLGGEDNAGADFMRAFETDATLTSGRFRYAIPHWYKVKRFFNLGSERNLKKSISIVHKFADEIIRSRMEEKTTQNKDQDLLSRFMANEDNSPKFLRDIIISFILAGGDTTSSALTWFFWILSTRPDIEQNILAELEKIRSRTRKEIGEMYSFDELQDMHYLQAALSETLRLYPPVPIDSKACQRDDILPDGTFIRKSWFVMYHAYAMGRMKSKWGENCEEVLPERWLENGVCRIESPFQFPIFHGGPRMCPGKDMAYIQMKSIVAAVIQKFEVKMVEKKTPKHLLSLTLRMENGLQVMVKKRPIYNVN | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29644869 | 29647496 | + | ClG42_10g0162800.10 | Clacu10g1628 | 260252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu10g1628 | 508 | PANTHER | CYTOCHROME P450 | 19 | 495 | - | - | |
| Clacu10g1628 | 508 | Pfam | Cytochrome P450 | 82 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | CDD | CYP86A | 70 | 495 | - | - | |
| Clacu10g1628 | 508 | PRINTS | E-class P450 group I signature | 294 | 311 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | E-class P450 group I signature | 314 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | E-class P450 group I signature | 440 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | E-class P450 group I signature | 450 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | E-class P450 group I signature | 362 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 443 | 452 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu10g1628 | 508 | SUPERFAMILY | Cytochrome P450 | 36 | 502 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | Gene3D | Cytochrome P450 | 31 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | P450 superfamily signature | 450 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | P450 superfamily signature | 363 | 374 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | P450 superfamily signature | 305 | 322 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu10g1628 | 508 | PRINTS | P450 superfamily signature | 441 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu10g1628 | Clacu-Chr10:29644869 | Clacu10g1892 | Clacu-Chr10:32508237 | 1.40E-102 | dispersed | |
| Clacu10g1628 | Clacu-Chr10:29644869 | Clacu10g1629 | Clacu-Chr10:29650224 | 6.80E-219 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu10g1628 | - | - | - | 0.0 |