Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1634 ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCTGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTCTGGACTCCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTGCAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGACTCAGTTTGGGTCGCCGCCGAATGGGCAAGTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTGGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 852 52.11 MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVTQFGSPPNGQVEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29685614 29686465 + ClG42_10g0163400.10 Clacu10g1634 260258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1634 283 FunFam Two-component response regulator 87 150 - -
Clacu10g1634 283 Gene3D - 88 150 - -
Clacu10g1634 283 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 229 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1634 283 MobiDBLite consensus disorder prediction 37 90 - -
Clacu10g1634 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
Clacu10g1634 283 MobiDBLite consensus disorder prediction 252 272 - -
Clacu10g1634 283 MobiDBLite consensus disorder prediction 48 65 - -
Clacu10g1634 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Clacu10g1634 283 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Clacu10g1634 283 MobiDBLite consensus disorder prediction 10 24 - -
Clacu10g1634 283 MobiDBLite consensus disorder prediction 1 24 - -
Clacu10g1634 283 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0629 Clacu-Chr4:19869208 Clacu10g1634 Clacu-Chr10:29685614 4.30E-104 dispersed
Clacu10g1634 Clacu-Chr10:29685614 Clacu11g0484 Clacu-Chr11:4586300 2.70E-15 dispersed
Clacu10g1634 Clacu-Chr10:29685614 Clacu03g0131 Clacu-Chr3:1429603 1.20E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48523 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1634 - - - 0.0