Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1653 ATGGAGGTTTTACAGGCCCTCGATTCTCAGGTTCTCATCGGTTTAGCAGCCGCCTTGATTGCCATTGTTGCTGGTGCTGTTTTCCTCTTTTCCTCCAGAAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTTAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGAAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGATTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGCATTGGGGACTATCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTCATGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAATGACAAAACAAAGGTTCACCTTATTTATGCCAATGTTACATTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTGTCCAAGGAAATGATCAAAGCACATTGTCCTGCACCAGCCGCTGACATTAAGATTTTACGGTGCGGTCCACCCCCAATGAACAAGGCCATGGGTGACCACCTTGATGCTCTTGGATATTCAGCTGAAATGCAGTTTCAATTCTAA 843 44.37 MEVLQALDSQVLIGLAAALIAIVAGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKPDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDYLAVKGPKGRFKYQPGQVHAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGDHLDALGYSAEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29936686 29941061 + ClG42_10g0165300.10 Clacu10g1653 260277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1653 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Clacu10g1653 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
Clacu10g1653 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Clacu10g1653 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Clacu10g1653 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
Clacu10g1653 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
Clacu10g1653 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
Clacu10g1653 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
Clacu10g1653 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Clacu10g1653 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Clacu10g1653 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Clacu10g1653 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Clacu10g1653 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Clacu10g1653 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Clacu10g1653 280 CDD cyt_b5_reduct_like 49 280 - -
Clacu10g1653 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Clacu10g1653 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Clacu10g1653 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
Clacu10g1653 280 Gene3D Translation factors 36 138 - -
Clacu10g1653 280 Gene3D - 139 280 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0547 Clacu-Chr4:18724820 Clacu10g1653 Clacu-Chr10:29936686 4.40E-135 dispersed
Clacu10g1653 Clacu-Chr10:29936686 Clacu11g0426 Clacu-Chr11:4006634 1.40E-51 dispersed
Clacu10g1653 Clacu-Chr10:29936686 Clacu03g0921 Clacu-Chr3:11796166 7.20E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1653 K00326 - csv:101212931 529.635