Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1697 ATGAATAACTTAACTGTGGAGACGGAAGATGTCTTTTCCAGCTTGCTTGAGCTTGCTGCGAATGATGACATTGATGCCTTCAAGAGATCAATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACGTGGCTCGAAGCAAATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAATCACGCCGTCGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGACCCTAATATGGTTGATGGGAAAGGACATCGACCTGTCGATGTGATCGTTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACACTTACAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCATCTCCTCTGAATGTCCCCTCATCAGCATCAGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGAAGAGTCTGCTTTTTTGCACACACCACTGAGGAACTGCGCCCTCTGTATGTCTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTCTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCGTTGAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAACAACAGACTATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTCGGTGCTAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 2109 46.51 MNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNHAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGKGHRPVDVIVAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQTMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30470450 30472558 + ClG42_10g0169700.10 Clacu10g1697 260321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1697 702 MobiDBLite consensus disorder prediction 647 671 - -
Clacu10g1697 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Clacu10g1697 702 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Clacu10g1697 702 PANTHER UNKEMPT FAMILY MEMBER 51 647 IPR045234 -
Clacu10g1697 702 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Clacu10g1697 702 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Clacu10g1697 702 Pfam Ankyrin repeats (3 copies) 54 126 IPR002110 GO:0005515(InterPro)
Clacu10g1697 702 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Clacu10g1697 702 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Clacu10g1697 702 MobiDBLite consensus disorder prediction 166 195 - -
Clacu10g1697 702 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Clacu10g1697 702 SUPERFAMILY Ankyrin repeat 6 137 IPR036770 -
Clacu10g1697 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
Clacu10g1697 702 Gene3D - 9 151 IPR036770 -
Clacu10g1697 702 MobiDBLite consensus disorder prediction 165 195 - -
Clacu10g1697 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Clacu10g1697 702 Gene3D - 272 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0433 Clacu-Chr7:5219653 Clacu10g1697 Clacu-Chr10:30470450 1.50E-131 dispersed
Clacu10g1232 Clacu-Chr10:25139578 Clacu10g1697 Clacu-Chr10:30470450 1.30E-252 dispersed
Clacu10g1697 Clacu-Chr10:30470450 Clacu11g0335 Clacu-Chr11:3007710 1.30E-50 dispersed
Clacu10g1697 Clacu-Chr10:30470450 Clacu02g2003 Clacu-Chr2:33467843 3.50E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48530 PF12796 Ank_2 1.80E-09 CL0465 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1697 - - - 0.0