Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1710 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACCACTACCAATTTCCCCCACCACCACCACCCTTCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTAGCCCCACACGATCATCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGCTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGACTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1062 42.47 MDDPSTNFFFTNLFKFNSPTTTNFPHHHHPSSSSSSSNPFPPPPPPPPNFFPTFHHPPPPSSPPLRQALPLLSLSPTRSSQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNANNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30592900 30595504 + ClG42_10g0171000.10 Clacu10g1710 260334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1710 353 Coils Coil 107 140 - -
Clacu10g1710 353 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Clacu10g1710 353 MobiDBLite consensus disorder prediction 81 96 - -
Clacu10g1710 353 MobiDBLite consensus disorder prediction 19 35 - -
Clacu10g1710 353 SUPERFAMILY beta-beta-alpha zinc fingers 167 193 IPR036236 -
Clacu10g1710 353 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 254 278 - -
Clacu10g1710 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Clacu10g1710 353 PANTHER ZINC FINGER PROTEIN WIP2 25 326 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Clacu10g1710 353 MobiDBLite consensus disorder prediction 306 353 - -
Clacu10g1710 353 MobiDBLite consensus disorder prediction 36 66 - -
Clacu10g1710 353 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
Clacu10g1710 353 FunFam zinc finger protein WIP2-like 170 193 - -
Clacu10g1710 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 275 IPR013087 -
Clacu10g1710 353 SMART c2h2final6 255 275 IPR013087 -
Clacu10g1710 353 SMART c2h2final6 171 193 IPR013087 -
Clacu10g1710 353 Gene3D Classic Zinc Finger 170 193 - -
Clacu10g1710 353 MobiDBLite consensus disorder prediction 19 140 - -
Clacu10g1710 353 FunFam Zinc finger protein WIP2 224 306 - -
Clacu10g1710 353 MobiDBLite consensus disorder prediction 109 139 - -
Clacu10g1710 353 MobiDBLite consensus disorder prediction 334 353 - -
Clacu10g1710 353 Gene3D Classic Zinc Finger 232 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1272 Clacu-Chr1:22008979 Clacu10g1710 Clacu-Chr10:30592900 7.30E-84 dispersed
Clacu03g0988 Clacu-Chr3:15580938 Clacu10g1710 Clacu-Chr10:30592900 9.20E-85 dispersed
Clacu04g0129 Clacu-Chr4:3108048 Clacu10g1710 Clacu-Chr10:30592900 2.90E-101 dispersed
Clacu09g0418 Clacu-Chr9:3713651 Clacu10g1710 Clacu-Chr10:30592900 7.60E-88 dispersed
Clacu10g1710 Clacu-Chr10:30592900 Clacu02g2378 Clacu-Chr2:36800980 7.30E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48533 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1710 - - - 0.0