Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu10g1713 | ATGGAGATTAAAGTAGGAACTGTAGTTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTACTCCACTCGCCGGATTCCGGCGGTGGCGCCACGGCGGCGGTTGTGAACGATGATTCCTTTCAACACTGTATCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAGCTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACTAGTTCAGTGCTGTTGAATTCGAGTGTCAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACAAAGAAGAGCAAGAACGAAAGCAACGAGGATGCCGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGCGGTCAAGCGACGGACAGCCATAGCCTAGCAGAACGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGCTGCAATAAGATCTCAGGCACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACTCGAAAGCTCATTTCCGACGATGGTAACGCCATTGATGTGGCCAGAAATCCCAGTAAGTGGAACAAGACAACAATATCAACCCCAATGGCATTTTGATGGTTCAGTTAACCAGCAAGCTTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGATTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA | 1119 | 48.7 | MEIKVGTVVGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSGGGATAAVVNDDSFQHCIKDVPKPYFSAFNCNLTFPTNSALIERAAKLSVLAEEHSPETTSSVLLNSSVNLEKVKNEPTTETDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGKGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFPTMVTPLMWPEIPVSGTRQQYQPQWHFDGSVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30633253 | 30637634 | - | ClG42_10g0171300.10 | Clacu10g1713 | 260337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu10g1713 | 372 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 210 | 260 | IPR011598 | GO:0046983(InterPro) | |
Clacu10g1713 | 372 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 118 | 332 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Clacu10g1713 | 372 | MobiDBLite | consensus disorder prediction | 183 | 201 | - | - | |
Clacu10g1713 | 372 | Pfam | Helix-loop-helix DNA-binding domain | 214 | 261 | IPR011598 | GO:0046983(InterPro) | |
Clacu10g1713 | 372 | SMART | finulus | 216 | 266 | IPR011598 | GO:0046983(InterPro) | |
Clacu10g1713 | 372 | Coils | Coil | 250 | 270 | - | - | |
Clacu10g1713 | 372 | Gene3D | - | 207 | 280 | IPR036638 | GO:0046983(InterPro) | |
Clacu10g1713 | 372 | MobiDBLite | consensus disorder prediction | 140 | 167 | - | - | |
Clacu10g1713 | 372 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 208 | 279 | IPR036638 | GO:0046983(InterPro) | |
Clacu10g1713 | 372 | CDD | bHLH_AtBPE_like | 200 | 285 | - | - | |
Clacu10g1713 | 372 | MobiDBLite | consensus disorder prediction | 140 | 201 | - | - | |
Clacu10g1713 | 372 | FunFam | transcription factor bHLH48-like isoform X1 | 207 | 279 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu10g1713 | Clacu-Chr10:30633253 | Clacu11g0583 | Clacu-Chr11:5542861 | 2.20E-33 | dispersed | |
Clacu10g1713 | Clacu-Chr10:30633253 | Clacu02g0522 | Clacu-Chr2:4882399 | 1.40E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48534 | PF00010 | HLH | 1.40E-05 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu10g1713 | - | - | - | 0.0 |