Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1713 ATGGAGATTAAAGTAGGAACTGTAGTTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTACTCCACTCGCCGGATTCCGGCGGTGGCGCCACGGCGGCGGTTGTGAACGATGATTCCTTTCAACACTGTATCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAGCTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACTAGTTCAGTGCTGTTGAATTCGAGTGTCAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACAAAGAAGAGCAAGAACGAAAGCAACGAGGATGCCGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGCGGTCAAGCGACGGACAGCCATAGCCTAGCAGAACGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGCTGCAATAAGATCTCAGGCACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACTCGAAAGCTCATTTCCGACGATGGTAACGCCATTGATGTGGCCAGAAATCCCAGTAAGTGGAACAAGACAACAATATCAACCCCAATGGCATTTTGATGGTTCAGTTAACCAGCAAGCTTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGATTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1119 48.7 MEIKVGTVVGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSGGGATAAVVNDDSFQHCIKDVPKPYFSAFNCNLTFPTNSALIERAAKLSVLAEEHSPETTSSVLLNSSVNLEKVKNEPTTETDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGKGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFPTMVTPLMWPEIPVSGTRQQYQPQWHFDGSVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30633253 30637634 - ClG42_10g0171300.10 Clacu10g1713 260337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1713 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983(InterPro)
Clacu10g1713 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 332 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu10g1713 372 MobiDBLite consensus disorder prediction 183 201 - -
Clacu10g1713 372 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983(InterPro)
Clacu10g1713 372 SMART finulus 216 266 IPR011598 GO:0046983(InterPro)
Clacu10g1713 372 Coils Coil 250 270 - -
Clacu10g1713 372 Gene3D - 207 280 IPR036638 GO:0046983(InterPro)
Clacu10g1713 372 MobiDBLite consensus disorder prediction 140 167 - -
Clacu10g1713 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983(InterPro)
Clacu10g1713 372 CDD bHLH_AtBPE_like 200 285 - -
Clacu10g1713 372 MobiDBLite consensus disorder prediction 140 201 - -
Clacu10g1713 372 FunFam transcription factor bHLH48-like isoform X1 207 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1713 Clacu-Chr10:30633253 Clacu11g0583 Clacu-Chr11:5542861 2.20E-33 dispersed
Clacu10g1713 Clacu-Chr10:30633253 Clacu02g0522 Clacu-Chr2:4882399 1.40E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48534 PF00010 HLH 1.40E-05 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1713 - - - 0.0