Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1719 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACTTCTTCTTCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCATCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAAACCCCAATTTTCCTGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCCCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAGTTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAGAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCTATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATGGACGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATGTGGATGGGAGATTTTAGGCCCTCCGAACTCATTAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA 1545 45.83 MASSNIKSTSIIQQANQQEEEKQQQQLLLHHQQQQPQLLQTPSFVISSNSKNSSLFNFQNPNFPDHHHHHHQLPFSMNLPSIPSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFYNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30697355 30705441 - ClG42_10g0171900.10 Clacu10g1719 260343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1719 514 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1719 514 PANTHER TRANSCRIPTION FACTOR TGA9 130 513 - -
Clacu10g1719 514 Pfam Seed dormancy control 314 388 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu10g1719 514 SUPERFAMILY Leucine zipper domain 222 264 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1719 514 CDD bZIP_HBP1b-like 222 274 - -
Clacu10g1719 514 MobiDBLite consensus disorder prediction 167 187 - -
Clacu10g1719 514 MobiDBLite consensus disorder prediction 1 34 - -
Clacu10g1719 514 Coils Coil 15 35 - -
Clacu10g1719 514 Coils Coil 241 268 - -
Clacu10g1719 514 MobiDBLite consensus disorder prediction 109 130 - -
Clacu10g1719 514 ProSiteProfiles DOG1 domain profile. 296 510 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu10g1719 514 FunFam BZIP family transcription factor 221 270 - -
Clacu10g1719 514 SMART brlzneu 218 273 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1719 514 Pfam Basic region leucine zipper 219 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu10g1719 514 Gene3D - 221 271 - -
Clacu10g1719 514 MobiDBLite consensus disorder prediction 109 225 - -
Clacu10g1719 514 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2264 Clacu-Chr2:35755549 Clacu10g1719 Clacu-Chr10:30697355 5.10E-90 dispersed
Clacu10g1614 Clacu-Chr10:29522068 Clacu10g1719 Clacu-Chr10:30697355 4.70E-80 dispersed
Clacu10g1719 Clacu-Chr10:30697355 Clacu11g1053 Clacu-Chr11:13091079 2.30E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48536 PF14144 DOG1 6.10E-31 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1719 K14431 - csv:101204923 835.099