Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1738 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCAGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATCTAATGAGGCTTGCTCAAGAGAATGGAAATATAACTGAAGATATCCTTCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAGCCAACAATTGCAGCTATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCATAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCACGGAGTCTGGCGTATTAAAGGCATTATTCAGGTTTCCAGATCGATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTTGATCCATCCTTTCCACGGTTCCACCTTGCGGAGCCTCTTCGACGGCCTGTTCTTACTGCGGAACCATCGTTAAGTACAAGAGTTCTACAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTATGGGAGCATCTAACGAATCAACAAGCTGTCGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTTGTTAAAACAGCGCTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATATGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTTTTTCATGATGATATCACAGTTGTTGTCATCTTTCTGGACTATGAGTTGCAAGGGAAGAAGGCACGTGTGCCAGAATTATCTGTTCGTGGGTTTACTGATACCGTTGGACCGTCAAATTTCAATGTTCTTCGAGGCATTGATGAGAATGGAAAGTCTGTTGGGTGA 1173 43.82 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMRLAQENGNITEDILRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDYELQGKKARVPELSVRGFTDTVGPSNFNVLRGIDENGKSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30914234 30917097 + ClG42_10g0173800.10 Clacu10g1738 260362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1738 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Clacu10g1738 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu10g1738 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Clacu10g1738 390 SUPERFAMILY PP2C-like 53 349 IPR036457 -
Clacu10g1738 390 Gene3D - 27 358 IPR036457 -
Clacu10g1738 390 SMART PP2C_4 43 346 IPR001932 -
Clacu10g1738 390 Pfam Protein phosphatase 2C 69 317 IPR001932 -
Clacu10g1738 390 CDD PP2Cc 47 348 IPR001932 -
Clacu10g1738 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0710 Clacu-Chr2:7326003 Clacu10g1738 Clacu-Chr10:30914234 1.10E-117 dispersed
Clacu10g1738 Clacu-Chr10:30914234 Clacu10g2041 Clacu-Chr10:33869066 3.70E-116 dispersed
Clacu10g1738 Clacu-Chr10:30914234 Clacu01g2125 Clacu-Chr1:32897366 4.00E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1738 K01102 - csv:101222146 762.681