Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1739 ATGACCGAAAAGTTAGACAGCTGGATCCAACGAGAACGTGACGCACTCAGTCCATTGCTATTGCTATTGCCATTGCCACCACCTCGACAGTTTCAAGAACACGAAGCTTTCTTGATTTCTAAGCTCAGAAATCATGATCGAGCAAACATTTTGCGACAATTCACAATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCTAGCATCGTTGGTCGCCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGGATTTTGACTTTAAAATATCCCATCGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCTTGAATCCTAAGGCGAATAGAGAGAAAATGACCCAAATTATGTTTGAGACTTTCAACACCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCACCGCCGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCTTGTTCCAGCCATCCATGATAGGCATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCAATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGAAACATTGTCCTCAGTGGTGGTTCCACTATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTTCACAGGAAATGCTTCTGA 1299 46.5 MTEKLDSWIQRERDALSPLLLLLPLPPPRQFQEHEAFLISKLRNHDRANILRQFTMADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30918767 30922418 - ClG42_10g0173900.10 Clacu10g1739 260363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1739 432 FunFam Major actin 315 395 - -
Clacu10g1739 432 SMART actin_3 62 432 IPR004000 -
Clacu10g1739 432 SUPERFAMILY Actin-like ATPase domain 61 210 IPR043129 -
Clacu10g1739 432 FunFam Actin, alpha skeletal muscle 58 223 - -
Clacu10g1739 432 Gene3D Actin; Chain A, domain 4 237 328 - -
Clacu10g1739 432 Gene3D - 195 395 - -
Clacu10g1739 432 CDD NBD_sugar-kinase_HSP70_actin 65 238 - -
Clacu10g1739 432 FunFam Putative actin-related protein 5 396 424 - -
Clacu10g1739 432 ProSitePatterns Actins signature 2. 413 421 IPR004001 -
Clacu10g1739 432 PANTHER ACTIN 63 424 IPR004000 GO:0005737(PANTHER)
Clacu10g1739 432 ProSitePatterns Actins signature 1. 110 120 IPR004001 -
Clacu10g1739 432 FunFam Actin, muscle 237 328 - -
Clacu10g1739 432 Pfam Actin 60 432 IPR004000 -
Clacu10g1739 432 Gene3D - 65 426 - -
Clacu10g1739 432 SUPERFAMILY Actin-like ATPase domain 204 432 IPR043129 -
Clacu10g1739 432 PRINTS Actin signature 293 309 IPR004000 -
Clacu10g1739 432 PRINTS Actin signature 197 216 IPR004000 -
Clacu10g1739 432 PRINTS Actin signature 106 117 IPR004000 -
Clacu10g1739 432 PRINTS Actin signature 172 185 IPR004000 -
Clacu10g1739 432 PRINTS Actin signature 118 140 IPR004000 -
Clacu10g1739 432 PRINTS Actin signature 83 92 IPR004000 -
Clacu10g1739 432 ProSitePatterns Actins and actin-related proteins signature. 161 173 IPR020902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1629 Clacu-Chr1:28384949 Clacu10g1739 Clacu-Chr10:30918767 2.00E-215 dispersed
Clacu02g0071 Clacu-Chr2:723767 Clacu10g1739 Clacu-Chr10:30918767 2.00E-215 dispersed
Clacu02g2076 Clacu-Chr2:34013878 Clacu10g1739 Clacu-Chr10:30918767 3.60E-217 dispersed
Clacu07g0312 Clacu-Chr7:3510871 Clacu10g1739 Clacu-Chr10:30918767 9.50E-218 dispersed
Clacu09g1411 Clacu-Chr9:19447196 Clacu10g1739 Clacu-Chr10:30918767 8.40E-212 dispersed
Clacu09g2010 Clacu-Chr9:34940491 Clacu10g1739 Clacu-Chr10:30918767 1.80E-216 dispersed
Clacu10g1739 Clacu-Chr10:30918767 Clacu11g0937 Clacu-Chr11:9066252 1.50E-94 dispersed
Clacu10g1739 Clacu-Chr10:30918767 Clacu04g0866 Clacu-Chr4:23020266 1.10E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1739 K10355 - mdm:103443130 750.74