Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1745 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAATTCGGTTCCAAATGAAGATGTCAATTTAGCTGATTTGACAGAGGAACCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACAAGACAACGGTGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATGCAGGCAATGGGAATGCATTGCAGCCATTACAGCCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGACAGGGAAAACGTGTGAAATTAATAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGAAGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAACGTGACTCCAATTTATGGTCGTGGCAGCAGTACCCCTGTGACTGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCGGAGGACTGCATTTAGTTTCCCAGTGGAGGATGTGATTCGACGATTAGGATACAGATTTGATGTCAATCGTGATCTAGACCAACCGCCAGAGCCAGAGCCAGAGCCAGACAGTTCACATGAGACATTTGGTAGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGCATTCGTAGAGAACAAATTTCACTGCCCCCTCATGATGATGTAGGAGATTTAGCACACACTGATGTGTCTAGCGTTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTCACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCTCTCATTCCTAGAAGTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCGTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCTATTTCAACATCATCCTCCAGAAGGAGAAATGATACTTTACAAGTTTCTGATGTAGACAGTGGAAACTCTCGAGCACCAAGAAGGAGAAGATTGGCTTGA 1290 43.72 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNAGNGNALQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSEAKECPVCKGEVTTKNVTPIYGRGSSTPVTEEDATLKIPLRPHARKVESLRQTIRRTAFSFPVEDVIRRLGYRFDVNRDLDQPPEPEPEPDSSHETFGRSPTLLNRILTSRGIRREQISLPPHDDVGDLAHTDVSSVEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLIPRSQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDTLQVSDVDSGNSRAPRRRRLA 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30980823 30982112 + ClG42_10g0174500.10 Clacu10g1745 260369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1745 429 SUPERFAMILY RING/U-box 137 194 - -
Clacu10g1745 429 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Clacu10g1745 429 MobiDBLite consensus disorder prediction 250 274 - -
Clacu10g1745 429 MobiDBLite consensus disorder prediction 352 371 - -
Clacu10g1745 429 MobiDBLite consensus disorder prediction 250 267 - -
Clacu10g1745 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 367 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:0071712(PANTHER)
Clacu10g1745 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 196 IPR013083 -
Clacu10g1745 429 MobiDBLite consensus disorder prediction 398 418 - -
Clacu10g1745 429 CDD RING-HC_AtRMA-like 139 182 - -
Clacu10g1745 429 FunFam Zinc finger family protein 122 195 - -
Clacu10g1745 429 Pfam Zinc finger, C3HC4 type (RING finger) 141 181 IPR018957 GO:0046872(InterPro)
Clacu10g1745 429 MobiDBLite consensus disorder prediction 398 429 - -
Clacu10g1745 429 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Clacu10g1745 429 SMART ring_2 141 181 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1687 Clacu-Chr1:29003832 Clacu10g1745 Clacu-Chr10:30980823 9.30E-24 dispersed
Clacu05g1409 Clacu-Chr5:16404614 Clacu10g1745 Clacu-Chr10:30980823 2.40E-07 dispersed
Clacu10g1263 Clacu-Chr10:25485403 Clacu10g1745 Clacu-Chr10:30980823 3.20E-34 dispersed
Clacu10g1745 Clacu-Chr10:30980823 Clacu11g1996 Clacu-Chr11:30924650 3.80E-21 dispersed
Clacu10g1745 Clacu-Chr10:30980823 Clacu08g1698 Clacu-Chr8:26573550 1.80E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1745 K10666 - csv:101220497 783.867