Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1746 ATGGAGTTGGGTTTGAGCCTTGGAGATCATCCTCCTTCCAATTCCAATAAACCATTTGGGTTTCTCTCTAAACCGCTTTCTTCTTCTTCTTCTTCATCCCTCATGGCTTTGGGATTTTGTGTTGGTTTAATTGGACATCATTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTTCCGCTTCCGCTTCCCTTCAAGATGATGAAGAAGATGATGAAGATGATGATAATGATCAGAAAACGGTTCTTCTCGGTTCAGCTTCCGGTTCGGATCCACCGGTTCAGCTCGATCTTCTTCCTTTGGCTCCTGTTCCTCGCTCTTCTTCTTCCTCCCTTCCTTTTCCATGGCTTTCTCATCACTTGATGGCGGAAGTGGGTAGTTCAGAGGGAGGAGAAAGGGTAGAGTTGGATGTGAACCGGGCGGCGGAGACAGAAGACAGTAGGGTGTCGTGTTTCCAAATGGAATTTGGGGCGAGAAATGGCGGCGGAATTAAAAGGAAGAGATCATGGGAAATGGAAATGGAAACAGAAAGAGGAGGTTGTTCAAGAATGAGTGATGATGATCAAGATCATAATGCCTCTGCTGCTGCTCCTAAAAAGCTTCGACTTTCAAAACAACAATCTGCCTTTCTTGAAGAAAGCTTCAAAGAACATACCACCCTCAATCCTAAGCAGAAGCTAGCACTAGCCAAGCAGCTAAACCTCCAACCTAGGCAAGTGGAAGTATGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAAGAACTTCAAGAATTAAGAGCTTTAAAAACTTCTCAGCCCTTTTATATGCAACTTCCAGCCACCACCCTCACCATGTGCCCCTCGTGCGAGCGCGTCGCCGCCGCCACCACCACCACCGCCTCTGTTCCCACCAAAACCGCCACCCCCGCCCCGTCATCCGCTCTTTGCCTCGCCAATAAACCGAAGATCTTGCCATTTCCTCATTTACATCAGGCTGCTTCATGA 1056 46.69 MELGLSLGDHPPSNSNKPFGFLSKPLSSSSSSSLMALGFCVGLIGHHSASASASASASASASLQDDEEDDEDDDNDQKTVLLGSASGSDPPVQLDLLPLAPVPRSSSSSLPFPWLSHHLMAEVGSSEGGERVELDVNRAAETEDSRVSCFQMEFGARNGGGIKRKRSWEMEMETERGGCSRMSDDDQDHNASAAAPKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLQPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVAAATTTTASVPTKTATPAPSSALCLANKPKILPFPHLHQAAS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31003534 31005543 + ClG42_10g0174600.10 Clacu10g1746 260370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1746 351 MobiDBLite consensus disorder prediction 1 31 - -
Clacu10g1746 351 MobiDBLite consensus disorder prediction 177 199 - -
Clacu10g1746 351 Gene3D - 200 250 - -
Clacu10g1746 351 MobiDBLite consensus disorder prediction 54 99 - -
Clacu10g1746 351 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677(InterPro)
Clacu10g1746 351 CDD homeodomain 197 253 IPR001356 GO:0003677(InterPro)
Clacu10g1746 351 Coils Coil 258 288 - -
Clacu10g1746 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 69 323 IPR050762 -
Clacu10g1746 351 MobiDBLite consensus disorder prediction 177 193 - -
Clacu10g1746 351 Pfam Homeodomain 198 250 IPR001356 GO:0003677(InterPro)
Clacu10g1746 351 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu10g1746 351 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g1746 351 FunFam Homeobox-leucine zipper protein HAT22 200 246 - -
Clacu10g1746 351 SUPERFAMILY Homeodomain-like 189 253 IPR009057 -
Clacu10g1746 351 SMART HOX_1 194 256 IPR001356 GO:0003677(InterPro)
Clacu10g1746 351 CDD bZIP 245 284 - -
Clacu10g1746 351 SMART halz 252 295 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu10g1746 351 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0663 Clacu-Chr7:12501115 Clacu10g1746 Clacu-Chr10:31003534 1.20E-33 dispersed
Clacu10g0244 Clacu-Chr10:2951263 Clacu10g1746 Clacu-Chr10:31003534 3.30E-50 dispersed
Clacu10g0841 Clacu-Chr10:16316330 Clacu10g1746 Clacu-Chr10:31003534 1.90E-50 dispersed
Clacu10g1262 Clacu-Chr10:25470460 Clacu10g1746 Clacu-Chr10:31003534 7.60E-44 dispersed
Clacu10g1746 Clacu-Chr10:31003534 Clacu10g1929 Clacu-Chr10:32910367 2.40E-13 dispersed
Clacu05g0040 Clacu-Chr5:692457 Clacu10g1746 Clacu-Chr10:31003534 2.90E-49 transposed
Clacu05g1923 Clacu-Chr5:28443242 Clacu10g1746 Clacu-Chr10:31003534 3.20E-42 transposed
Clacu10g1746 Clacu-Chr10:31003534 Clacu09g0379 Clacu-Chr9:3340058 5.40E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48540 PF00046 Homeodomain 2.30E-15 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1746 K09338 - csv:101222778 458.759