Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1799 ATGAACACCTCCACTGACTCTGATGGCGGAGACGGCGGCAGCGTCGGAAGTTTCCCCTACGTCGTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCGCGACCTATTTCTGCACCAGAACCACCGTTCCGTCGCCGAATCGCCGTCTCCGGCCGGCGGAACAGCGGGATTTCGTCGTCGAGTTTGGACCGGGGCTTGAAGATGAGGTCATTAATGGGTATCCGAAGATTCTGTACTCGGAGGTGAAATTGGAGGGAAAATTGGAGTCCGCCGCCGCGAGGGGTTGTTCGATATGTTTGGGGGATTATAAAAACGACGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACAGCGGTTGTATTGATCCGTGGTTGCGGATGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTGCCGACGCCGATTTCAACCCCTTTGGCGGAGACGGTTCCGTTGGCCATCGGAAGGAGTTGA 498 55.22 MNTSTDSDGGDGGSVGSFPYVVGISVGILFLLTTLTIATYFCTRTTVPSPNRRLRPAEQRDFVVEFGPGLEDEVINGYPKILYSEVKLEGKLESAAARGCSICLGDYKNDDVLRLLPDCGHLFHSGCIDPWLRMNPSCPVCRTSPVPTPISTPLAETVPLAIGRS 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31602422 31602919 - ClG42_10g0179900.10 Clacu10g1799 260423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1799 165 SMART ring_2 100 141 IPR001841 -
Clacu10g1799 165 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 159 IPR045899 -
Clacu10g1799 165 Pfam Ring finger domain 100 142 IPR001841 -
Clacu10g1799 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Clacu10g1799 165 CDD RING-H2_PA-TM-RING 100 142 - -
Clacu10g1799 165 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Clacu10g1799 165 SUPERFAMILY RING/U-box 74 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1573 Clacu-Chr1:27817923 Clacu10g1799 Clacu-Chr10:31602422 2.20E-44 dispersed
Clacu08g0963 Clacu-Chr8:19712616 Clacu10g1799 Clacu-Chr10:31602422 1.00E-14 dispersed
Clacu08g1228 Clacu-Chr8:22179692 Clacu10g1799 Clacu-Chr10:31602422 2.30E-25 dispersed
Clacu10g1642 Clacu-Chr10:29804694 Clacu10g1799 Clacu-Chr10:31602422 3.30E-07 dispersed
Clacu10g1799 Clacu-Chr10:31602422 Clacu11g0827 Clacu-Chr11:8186532 4.10E-08 dispersed
Clacu10g1799 Clacu-Chr10:31602422 Clacu07g1515 Clacu-Chr7:29760181 2.20E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1799 - - - 0.0