Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1804 ATGAACGATTTATTCTCCTCTCGATCCTTTTCCCGCGACACCCATGTCGTTGAAATGGGCAACGCTTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACACTAACCTCCGTGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCTCTTGCTCTCAAGAAGGCCAAGCTCATTAAAGTCCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAACCGGAGTCTCCCTGGTTGCGGTCCCGGTTCCTCTTCTGACCGGACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGACTCAATGGAGAGTTTCAATAATCTCAGGCAACAGATCTCCTCTGAGTACCGGGAGACCGTTCAGCGAAGATATTACACGGTTACTGGGGAAAATCCGGACGAGAAGACCATTGATGTACTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATTCTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCATGAGCAAGGCGAGAAACTTGACGACATCGAAAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGCGGCACGCAGGAGTTGACAACAGCTAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTGTGCTGCTCATTGTCATGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAACAACAGTGGACCCTAA 909 47.96 MNDLFSSRSFSRDTHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELERLYTNLRDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIIVLLIVMVIVLSLQPWKKNNSGP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31661178 31662819 - ClG42_10g0180400.10 Clacu10g1804 260428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1804 302 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
Clacu10g1804 302 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Clacu10g1804 302 FunFam Syntaxin 132 194 293 - -
Clacu10g1804 302 CDD SNARE_syntaxin1-like 200 262 - -
Clacu10g1804 302 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Clacu10g1804 302 SMART tSNARE_6 196 263 IPR000727 -
Clacu10g1804 302 Gene3D - 197 293 - -
Clacu10g1804 302 Pfam SNARE domain 237 289 IPR000727 -
Clacu10g1804 302 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu10g1804 302 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Clacu10g1804 302 Gene3D - 29 161 - -
Clacu10g1804 302 PANTHER SYNTAXIN 33 280 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Clacu10g1804 302 Coils Coil 204 224 - -
Clacu10g1804 302 Coils Coil 126 150 - -
Clacu10g1804 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Clacu10g1804 302 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Clacu10g1804 302 Coils Coil 31 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1572 Clacu-Chr1:27813200 Clacu10g1804 Clacu-Chr10:31661178 1.60E-111 dispersed
Clacu03g0558 Clacu-Chr3:5754090 Clacu10g1804 Clacu-Chr10:31661178 5.50E-91 dispersed
Clacu04g0566 Clacu-Chr4:19000785 Clacu10g1804 Clacu-Chr10:31661178 7.40E-59 dispersed
Clacu10g1344 Clacu-Chr10:26467118 Clacu10g1804 Clacu-Chr10:31661178 1.40E-65 dispersed
Clacu10g1804 Clacu-Chr10:31661178 Clacu01g2023 Clacu-Chr1:32113083 1.30E-47 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1804 K08486 - csv:101208931 552.747