Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1808 ATGGAAGATGAAATCGAAATCCCCCATTATTTCCTCTGCCCCATCTCCCTCCAAATCATGAAAGACCCTGTAACTCTCCCCTCCGGCATAACCTACGACCGCCACTCCATTGAAACTTGGCTCTTCTCCAACAAAAACTCCTCCTGCCCCGTCACCAAACTCCCCATCTCCGACTCCGATTCCGATCTCCTCACCCCTAACCACACCCTCCGCCGTCTAATCCAAGCTTGGTGTACTTTAAACTCCTCCCATGGCGTCGAACGCTTCCCCACTCCCAAACCCCCCATCCATAAATCCCAAATCCTTCACCTCATTTCCTCTGCCAATACTTCCCCTTCTTCCTTAATCTCCTCCATCCGCCGTCTCCGCTCCATATCCGCCGACTCTGAAACTAATCGCCGTTGTGTTGAATCCGCCGGAGCGCCAGAGTTTTTAGCCTCTGTTATTGTCGGCACCGACTCCTCTGCCTCTCATGAAGCTGTCTCTACTCTCCATTATCTCCGTCTCTCCGATTCAACATTCAAATCCTTGGCTACCCATTCCGAGTTTCTCGATTCTTTGACGAATTTCATGAAATTACAAGGTACCCATGAATCGTCGAGAGCTTATGCGGTGTTGATTTTGAAATCGATCTTCGAAGTCGCTGACCCACTTCAACTAAGTTTCTTGAAATCCGATTTGTTTGTGCGGATTGTTGAGATTTTGAAGGATCGATCATCGTCTCAGCAGATTCTCAAGGCGGCATTGGGGATTTTGATTGCGGCGTGTCCATGGGGGAGGAACAGAGTGAAGGCAGTGGAGGCAGGTGGGGTTGGGGTTTTGGTTGAGATTTTACTAGCGACGCCGGAAAGGAGGGTATGTGAGATGACGTTGACGGCAATGGATTTATTCTGTGGGTGTGCGGATGGCAGGGCGGCGCTGCTGGCACACGGCGGAGGTATGGCCGTTGTTTCGAAGAAGATACTGAGAGTGTCGCAAGTGGGGAGTGAAAAGGCGGTGAGGGTTCTGTATTGGGTGGCGAAATTCTCGGGAAGTCCGGCGGTTTTGATGGAAATGACGCAATTAGGGATTGTGGCGAAGCTTTGTTTGGTTCTGCAAATTGAAAGTGGAAGCAAGACGAAGGAGAAAGCTAGAGAGATTTTGAAAATGCATGCTCGTGTTTGGAAGAATTCGCCGTGTATTCCTTCTAAATTGGCTTCTTCATATCCTCCAAATTAA 1218 49.51 MEDEIEIPHYFLCPISLQIMKDPVTLPSGITYDRHSIETWLFSNKNSSCPVTKLPISDSDSDLLTPNHTLRRLIQAWCTLNSSHGVERFPTPKPPIHKSQILHLISSANTSPSSLISSIRRLRSISADSETNRRCVESAGAPEFLASVIVGTDSSASHEAVSTLHYLRLSDSTFKSLATHSEFLDSLTNFMKLQGTHESSRAYAVLILKSIFEVADPLQLSFLKSDLFVRIVEILKDRSSSQQILKAALGILIAACPWGRNRVKAVEAGGVGVLVEILLATPERRVCEMTLTAMDLFCGCADGRAALLAHGGGMAVVSKKILRVSQVGSEKAVRVLYWVAKFSGSPAVLMEMTQLGIVAKLCLVLQIESGSKTKEKAREILKMHARVWKNSPCIPSKLASSYPPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31752453 31753670 - ClG42_10g0180800.10 Clacu10g1808 260432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1808 405 SMART Ubox_2 10 77 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu10g1808 405 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630(InterPro)
Clacu10g1808 405 Pfam U-box domain 7 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu10g1808 405 Gene3D - 96 390 IPR011989 -
Clacu10g1808 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Clacu10g1808 405 SUPERFAMILY RING/U-box 4 85 - -
Clacu10g1808 405 SUPERFAMILY ARM repeat 101 371 IPR016024 -
Clacu10g1808 405 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu10g1808 405 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Clacu10g1808 405 CDD RING-Ubox_PUB 8 60 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1250 Clacu-Chr3:23938583 Clacu10g1808 Clacu-Chr10:31752453 7.00E-73 dispersed
Clacu03g1259 Clacu-Chr3:24170254 Clacu10g1808 Clacu-Chr10:31752453 5.50E-78 dispersed
Clacu05g0302 Clacu-Chr5:2590246 Clacu10g1808 Clacu-Chr10:31752453 2.40E-52 dispersed
Clacu06g0071 Clacu-Chr6:864967 Clacu10g1808 Clacu-Chr10:31752453 3.00E-37 dispersed
Clacu10g1808 Clacu-Chr10:31752453 Clacu11g1569 Clacu-Chr11:26829994 5.80E-11 dispersed
Clacu04g0556 Clacu-Chr4:18879399 Clacu10g1808 Clacu-Chr10:31752453 6.90E-116 transposed
Clacu05g1171 Clacu-Chr5:10775569 Clacu10g1808 Clacu-Chr10:31752453 4.30E-49 transposed
Clacu05g1286 Clacu-Chr5:12855877 Clacu10g1808 Clacu-Chr10:31752453 6.00E-46 transposed
Clacu07g0204 Clacu-Chr7:2417510 Clacu10g1808 Clacu-Chr10:31752453 3.00E-06 transposed
Clacu07g0564 Clacu-Chr7:7657244 Clacu10g1808 Clacu-Chr10:31752453 2.30E-45 transposed
Clacu11g1019 Clacu-Chr11:12369128 Clacu10g1808 Clacu-Chr10:31752453 1.90E-24 transposed
Clacu10g1808 Clacu-Chr10:31752453 Clacu02g2296 Clacu-Chr2:35999190 1.40E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1808 - - - 0.0