Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1809 ATGGCGACTTACCTTCATGGAAATTCTGATCAATTCCAATCTTCTGATGGTGGCCTTCAAACCCTTGTCTTAATGAATCCAAGCTATGTTCAATTCTCAGACACGCCGCCGCCGCCGCCTCCGTCCCACCCTAATCTCGTCTTCTTCAATTCTCCTTCTACGGCTGCTAATTCCTATACTACACTCACACAAGCGCCCCCGTCTTCTCACACTCAACAATTCGTTGGAATTCCGTTGCAGACGACTGCCGCTTCCCCGACGTCACAAGACCATAGTTCGCATCCTTTGAATCCCCACCATGATATCTCTGCCTTGCACGGCTTTGCTCCACGCCTTCACCATAACATTTGGAACCAAATTGACCCATCCACGGCCGCGCGTGAGTCTGCACGTGCTCAGCAGGGCTTGTCCTTGAGCCTTTCTTCGCAGCACCAGCAAGGTTTTGGGTCGAGAGACGTTCAATCTCAGACCCAACAGGCGGCGTCTGGCGAGGAGAACATGCGGATCTCCGGTGGATCGAGTTCTTCGGCTTCTGGTGTCACTAACGGCGTTGCTGGAATTCAGGGCGTTTTAATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAGGTTGTTAATGTCACCCAAAACGGAATTAAAAGTGAATCATCTCCAAAGAAGGCCACCGGAAATCAATCGAAGATGATCGGAGATGCTCCCGCTGCCACCGGAACTGCAGACGGTTCTTTAGAAGGAGAAACCGACGGTAAACGGGCCGCGGAGCTTACAACCACCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGACGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCTCATTCGAGCAGGCGGCCGGAGCCGGTTCGGCGAGAACCTACACCGCCCTTGCACTTCAGACGATTTCGAAGCAATTCCGTTGCTTAAAAGACGCAATCACCGGCCAAATCCGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGCATGATCCAACACAATGCTTGGAGACCTCAGAGGGGCTTACCGGAGAGATCGGTATCGATTCTTCGGGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCAGATAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAAGCCAGGTTTCGAATTGGTTTATAAACGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTACATGGAGGAAATCAAAGAGCAAGAACAGAACGGCAGCGGATCGACACCGGCGACGGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCAGAGACAAAAAGCCCCAATTCAAAACAAGAGGAAAAAAGCCCAAATCCAAACCAAAACGTGCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGAAACCCATCTGGATTTACACTCATCGGAGCCTCATCGGAGCTCGACGGAATCACACGAGGAAGCCCTAAAAAACAGAGAGGCCCAGAAATCCTTCATTCCTCAAATAACAACGTCCCTTTCATAAACATGGACATCAAACCCCGAGAAGAAGAAGAACATCAAAATCACAATCACAATCACAATCCCCATCATAATCATCATCTTCCAATGAAATTCGACGACGAGAGACAAAACAGAGATGGGTATTCATTTCTAGGCCAACCCCATTTCAACATCGGCGGATTCGCCCAATACCCAATCGGCGAAATCGCCAGATTCGACGCCGATCAGTTTACTCCAAGATTCTCCGGCAATAATGGTGTCTCTTTGACGTTAGGCCTTCCCCATTGTGAAAATCTCTCGTTAAACGCAGCTACCCACCAAAGCTTTCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATCCAAAATGGAAAAAGGTTCGCTGCTCAATTACTGCCAGACTTTGTGGCCTAA 2139 48.43 MATYLHGNSDQFQSSDGGLQTLVLMNPSYVQFSDTPPPPPPSHPNLVFFNSPSTAANSYTTLTQAPPSSHTQQFVGIPLQTTAASPTSQDHSSHPLNPHHDISALHGFAPRLHHNIWNQIDPSTAARESARAQQGLSLSLSSQHQQGFGSRDVQSQTQQAASGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKSESSPKKATGNQSKMIGDAPAATGTADGSLEGETDGKRAAELTTTERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGSGSTPATEKSNDDSVSKSIAPPPETKSPNSKQEEKSPNPNQNVHPSISISNSSGGNVRNPSGFTLIGASSELDGITRGSPKKQRGPEILHSSNNNVPFINMDIKPREEEEHQNHNHNHNPHHNHHLPMKFDDERQNRDGYSFLGQPHFNIGGFAQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNAATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31768159 31770585 - ClG42_10g0180900.10 Clacu10g1809 260433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1809 712 Coils Coil 263 283 - -
Clacu10g1809 712 SUPERFAMILY Homeodomain-like 380 446 IPR009057 -
Clacu10g1809 712 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu10g1809 712 SMART prehox3 185 331 IPR006563 -
Clacu10g1809 712 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677(InterPro)
Clacu10g1809 712 MobiDBLite consensus disorder prediction 452 522 - -
Clacu10g1809 712 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 480 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu10g1809 712 FunFam BEL1-like homeodomain protein 9 382 444 - -
Clacu10g1809 712 MobiDBLite consensus disorder prediction 124 179 - -
Clacu10g1809 712 MobiDBLite consensus disorder prediction 450 554 - -
Clacu10g1809 712 CDD homeodomain 379 440 IPR001356 GO:0003677(InterPro)
Clacu10g1809 712 SMART HOX_1 379 443 IPR001356 GO:0003677(InterPro)
Clacu10g1809 712 Pfam Associated with HOX 191 330 IPR006563 -
Clacu10g1809 712 MobiDBLite consensus disorder prediction 82 102 - -
Clacu10g1809 712 MobiDBLite consensus disorder prediction 214 252 - -
Clacu10g1809 712 Gene3D - 374 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0823 Clacu-Chr4:22598288 Clacu10g1809 Clacu-Chr10:31768159 5.70E-47 dispersed
Clacu10g1809 Clacu-Chr10:31768159 Clacu10g2121 Clacu-Chr10:34445374 3.20E-49 dispersed
Clacu01g0243 Clacu-Chr1:2363460 Clacu10g1809 Clacu-Chr10:31768159 5.70E-68 transposed
Clacu08g1854 Clacu-Chr8:27831823 Clacu10g1809 Clacu-Chr10:31768159 5.80E-43 transposed
Clacu09g0275 Clacu-Chr9:2475124 Clacu10g1809 Clacu-Chr10:31768159 9.50E-72 transposed
Clacu11g0554 Clacu-Chr11:5221210 Clacu10g1809 Clacu-Chr10:31768159 3.30E-83 transposed
Clacu10g1809 Clacu-Chr10:31768159 Clacu02g2295 Clacu-Chr2:35989727 3.70E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48547 PF07526 POX 1.30E-49 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1809 - - - 0.0