Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1846 ATGTCCATAAACCACTTCTCTCCTGGCTTCCATCGACCACTCTTCTCTACTCCCCAACTCCCCATCATGCTTAACCCCAAATCATCCCTCTCCGTCGCCGCCGCCGCCGACCTCCTCCCCATGTTCGAAAAACCCTTAACCCCCAGCGACGTTGGCAAGCTCAACCGTCTCGTCATCCCCAAGCAATACGCCGAAAAATACTTCCCCCTCTCCCCCTCCGCCGCGGTTGCCGCCGCCGGCGACTCTGCCGACAAGGGGTTACTCCTCAGCTTCGAAGATGAGTCCGGCAAGATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTAACGAAGGGGTGGAGCCGGTTTGTGAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTTTTTGAACGCCACCGGCGTGATGGTGATAGGTTGTTCATTGGGTGGAAGAGGAGGTCGGCGCCGTCTCCGGCGGACACTGCCGTGGCTACCGCGAGTGGCGGTGGAGGTTGGACTAGAATGTTCTGTTCTACAAACCCATATCCTTCTTCTCATCATCATCATCATCACCATCATCTTCCTTCACCGCCATACCAATCTTCTTCTGATTCTCCTCATGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGTTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCCGAACCACCGTCGACACTCAGTGTCGGGTCAAGCTTAAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 876 53.2 MSINHFSPGFHRPLFSTPQLPIMLNPKSSLSVAAAADLLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSAAVAAAGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSAPSPADTAVATASGGGGWTRMFCSTNPYPSSHHHHHHHHLPSPPYQSSSDSPHAESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTLSVGSSLSLSGRDPTRHSFYTHYSSPLPHHMDFTFSQDVKQTKYQG 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32150667 32153929 + ClG42_10g0184600.10 Clacu10g1846 260470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1846 291 SMART B3_2 42 153 IPR003340 GO:0003677(InterPro)
Clacu10g1846 291 ProSiteProfiles B3 DNA-binding domain profile. 42 153 IPR003340 GO:0003677(InterPro)
Clacu10g1846 291 MobiDBLite consensus disorder prediction 238 256 - -
Clacu10g1846 291 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 38 231 IPR044800 GO:0003700(InterPro)
Clacu10g1846 291 MobiDBLite consensus disorder prediction 195 216 - -
Clacu10g1846 291 Pfam B3 DNA binding domain 42 152 IPR003340 GO:0003677(InterPro)
Clacu10g1846 291 MobiDBLite consensus disorder prediction 235 256 - -
Clacu10g1846 291 CDD B3_DNA 40 142 IPR003340 GO:0003677(InterPro)
Clacu10g1846 291 Gene3D - 33 161 IPR015300 -
Clacu10g1846 291 MobiDBLite consensus disorder prediction 182 216 - -
Clacu10g1846 291 SUPERFAMILY DNA-binding pseudobarrel domain 40 153 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1314 Clacu-Chr6:24113675 Clacu10g1846 Clacu-Chr10:32150667 3.40E-25 dispersed
Clacu10g1846 Clacu-Chr10:32150667 Clacu07g0810 Clacu-Chr7:20536024 1.00E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48550 PF02362 B3 8.80E-31 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1846 K09287 - csv:101214938 475.322