Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1906 ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATCACTACTGCCCCATCTCGCTCTCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCACGGCCGCCGCCTCCGCCTTCCGCCACCACCATAATCCCTACGACCTCATCATGATGATGCCACGTGACACTCAGCTACCCGACTTTCGCTCCGATTCCGCCACCACACCACCCGCCATCGTCTCCGCTCAGCCAGGTCCCTCCGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCTCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAGGAAGCCAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCTTAGATTCCAACAGAACGGGACCAACAACCCGACTGCGGCACCTCCAATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTCAGCCTCTCGAACACGTCAGAGTTCGAAACCTCGGCCTCGTCAGATGGCAACGACGACCCCAGCTCGGTTGGCATTATGGACAACGATTCAATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCGAAAATCAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGCGAAGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGATAGGGAGAGAAGCTTTTGGGAAAAGGAGAGAGCATGGATAGAATCTAGAGATGCTGCATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATTGAGAGATAATCAATACAACTCCTCACCCGACCTCGGATTAATCGTAGCCGAGCGTCATAGAAATAATAATGAGAACCAAAACGAGGATGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTACTAGCAGACAACAATAATTACCAAAGGAAAATAATAGACAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCACCTACAATCTTTACTTCCAACAAACAGATTCCACCCTTTACAGTCGTGGCGGTGGCCGTGGCAGTGGCGGACCGTACGGCGGTGCCACCGACATCAAAGAACAAAGTCCAAACAGTTCAAACGTGGGCGGTGGTGGCGGCGGCGGCAGCGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA 1575 47.68 MEMDDQYALSDLRHLITTAPSRSHFPSSSSIPHHDLSSSTAAASAFRHHHNPYDLIMMMPRDTQLPDFRSDSATTPPAIVSAQPGPSAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTAAPPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDPSSVGIMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWEKERAWIESRDAALMDALQRLTGRELRDNQYNSSPDLGLIVAERHRNNNENQNEDGSEILNNNTARELLADNNNYQRKIIDNQGNKKRKENSTSTATTYNLYFQQTDSTLYSRGGGRGSGGPYGGATDIKEQSPNSSNVGGGGGGGSVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32720489 32723266 + ClG42_10g0190600.10 Clacu10g1906 260530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1906 524 Coils Coil 299 326 - -
Clacu10g1906 524 CDD GT1 104 169 - -
Clacu10g1906 524 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 247 280 - -
Clacu10g1906 524 Gene3D - 105 167 - -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 211 226 - -
Clacu10g1906 524 PANTHER FI21293P1 92 434 - -
Clacu10g1906 524 FunFam trihelix transcription factor PTL-like 105 167 - -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 247 264 - -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 451 487 - -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 211 232 - -
Clacu10g1906 524 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 471 486 - -
Clacu10g1906 524 MobiDBLite consensus disorder prediction 422 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2351 Clacu-Chr5:31923962 Clacu10g1906 Clacu-Chr10:32720489 5.00E-55 dispersed
Clacu08g0501 Clacu-Chr8:9245709 Clacu10g1906 Clacu-Chr10:32720489 4.50E-34 dispersed
Clacu08g0502 Clacu-Chr8:9382676 Clacu10g1906 Clacu-Chr10:32720489 3.70E-21 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48557 PF13837 Myb_DNA-bind_4 2.40E-19 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1906 - - - 0.0