Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1912 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACCAGGGAACCGGGTTTGAAGAAGCCGCGACTGGCCGATGAGGCTGAACGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGGAACAATATTGTGCAACCACCCAGATTTCGAGCAAGTGATAGGGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAACCTCAGCCACCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACCGCCCTTGCGGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCTCTGCCACCGTTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTGTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATTGAGAAAGAACTTGGGTTCGTGCCTAGCGGTAGTTCTTCTGGGGCCATAACCTCCAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAGCGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGTGTGACAACAAATGTAAGTCAGGATGTAGCCCAAGCCAAAATTAATACTGGACGTCCATGGGCAGATGCTCCAATTAAAGTGCTTGACATTCAACGTCCCCTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGGATTTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACATCGGGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCTGAGAAACTATCTGGTCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTTCACGTCTACTGCCCGTGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGATGACAGGTCATGGTGCACCTGCTATCGCCGGTAGCACTAGAAAAGATCAATGGACTCTTGAGGATTCGGATAATTCGGGTATGGACAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAACAAAGGTCTACGTGGCAACTGCAAGAGTCAATATCTCTGGATGGGCTAAGAGGCGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGTTATAGTGCTACTCTTACTGCACTGTCAGGTGCTAATTCTTCATCTAATATTGGGGCTTCAGGACATGGGTTTCTTAATAAAGGAGGTTCAGGGCCCCTTGGGACTGTAAGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAACCACCCTTGCACCAACGCCCCCCTTCACCATTGTTAGTGGATCATGTTCCTCATCAAATACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGACATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAATCTTCAAAAGCCCCTGCCTCATGACCTACAAGCTCCAGCTTTATCCATACCTGCGTCTCAACCTAGGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTACACAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCAGGCACCAATATTGGACCATCCTCATCAGCTGGGACAGTTCCAGATCATTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATCCAATAACCAGTAGCATGCAGCAGAATATCGGCTTCCAAGATGTGGGAAATATGAAACCTCGCTCAAGCATTAAACCTCCGCTACCAAGCCGGTCTTCTCCTGCCCATACATTCGCAGAGCCAAAGATTCAGGGAGAATCCCCAGTAGGTCCTCCATCACTTGAAAGCCCATCAACTATGGTTAAGTTGTCTCGAACTAAGGAAGAAGAACCATCGTTGCCATCTGATCCACTCCCACCTTCATCTCCTATGAACAGTGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCAGCTTCAAAAGGAGAATTAACAAATAGTGTGACATCCCAGATGCCTTCACAGCATGAAAATTTGAAGTCAGGTGATGCTGTGGCTAGTTCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTGCCAGTCACTCATCTATGAGACTTGAATCACCTTCAAAAGCTGCCGCTAGGAGCTCTAGTAGTCCACCTCCATCTGCCACAACTGAAATAAAGAACCTCATAGGCTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGATGATATTCCATACCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACAGTTGGAAACTCACTCACGGTGGCACACATTAAGAGCTGAGGCAAACAATTCTAGTAGCACACCAAGAAGATGGTATCCAAGTTCAAGTGATTGGATTTCTGGAAATGCGAGACTTCTACTTGATGCTGCAACTTCTCTGGACGAGTTCAACATGATGGAAGAAGATAATGAGCCAATGGTTCCTGCGGATGAAGATCAATTTGCCTGTGTTATATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTAGGATGCACAAATGAACAAGTTGCCAGAGGACCCATTGTGCACACGAATTGTTTGACTGAAAGTTCAGTATATGACGTGGGAGTGGCAACTGATATTAAGATGGAAATGGATGGAGTGGTAGCTCTATACTGCAAAATTTTCACTTAA 3249 45.52 MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGNNIVQPPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFVPSGSSSGAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGMTSDATGVTTNVSQDVAQAKINTGRPWADAPIKVLDIQRPLRDAPNDMAQEKNITAGFADYEYGSDLSRTSGVGRRVVDEGRDKPWSSAGSNLAEKLSGQRNGFNIKLGYENYPAPKSANTGSRLLPVQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSMMTGHGAPAIAGSTRKDQWTLEDSDNSGMDNKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSTWQLQESISLDGLRGGVPRKNSGQSGGYSATLTALSGANSSSNIGASGHGFLNKGGSGPLGTVSHQRFPSRSVAFPSGQPPLHQRPPSPLLVDHVPHQIHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDNLQKPLPHDLQAPALSIPASQPRHQFSLSESLKPDVTQSELSSQHAVSIPGTNIGPSSSAGTVPDHLPAEILGEPSTSSLLAAVMKSGLFSNHPITSSMQQNIGFQDVGNMKPRSSIKPPLPSRSSPAHTFAEPKIQGESPVGPPSLESPSTMVKLSRTKEEEPSLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQHENLKSGDAVASSVPVPSIPVSSASHSSMRLESPSKAAARSSSSPPPSATTEIKNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLETHSRWHTLRAEANNSSSTPRRWYPSSSDWISGNARLLLDAATSLDEFNMMEEDNEPMVPADEDQFACVICGELFEDFYSQELGNWMFKGAMYITIPSVGSEVGCTNEQVARGPIVHTNCLTESSVYDVGVATDIKMEMDGVVALYCKIFT 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32763585 32770374 - ClG42_10g0191200.10 Clacu10g1912 260536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1912 1082 ProSitePatterns Zinc finger C2H2 type domain signature. 918 938 IPR013087 -
Clacu10g1912 1082 CDD CID_Pcf11 83 195 IPR047415 -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 825 840 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 825 882 - -
Clacu10g1912 1082 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 1069 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 1 29 - -
Clacu10g1912 1082 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Clacu10g1912 1082 Gene3D - 73 203 IPR008942 -
Clacu10g1912 1082 ProSiteProfiles Zinc finger C2H2 type domain profile. 916 943 IPR013087 -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 533 563 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 535 549 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 782 796 - -
Clacu10g1912 1082 SMART 558neu5 81 203 IPR006569 -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 1 78 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 454 484 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 713 796 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 849 882 - -
Clacu10g1912 1082 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 429 504 - -
Clacu10g1912 1082 MobiDBLite consensus disorder prediction 64 78 - -
Clacu10g1912 1082 Pfam CID domain 88 196 IPR006569 -
Clacu10g1912 1082 SUPERFAMILY ENTH/VHS domain 78 202 IPR008942 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0287 Clacu-Chr3:3295740 Clacu10g1912 Clacu-Chr10:32763585 4.00E-75 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1912 K14400 - csv:101223169 1849.33