Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1916 ATGTACGATGTGAGTGAAAGCGCAGAGAGAGATCGAATCAAGGATGGAGATCGGATCGAGGAGAAAGCAGTGAAGAGCCAAAGATGGGAGAAAGCGGGAAGGAAGACGTGTTTCCGCCCATCTCAGTTGATGAGTCTTCGGTACTACCAATCTCGTACTCTCAACCGGCTCGAACCAGGTCCAAACGGATTTCAGGTGATCGGAATTCTCAGAATCTCGATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGTTTCGACAACGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACGGATGGGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGATGGCCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATGAGCTCTGTTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACGAGCCTGCCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAGGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATGCGTTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGCCTGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACACAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCATTGTATTTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCCCAAGACAGGGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATCTTATACAACCAACTGTCCAGGTTGAGGATTCAATCCCACTGAAGTACGTTCCACATATTAATCGTGGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACTTAAGGTTTGCACCAGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGCGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTATCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACCCGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCCGCAGCTGGAACACCTGAATGGATGGCGCCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATCTTGTGGGAGTTGGCAACGTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGAGAAGAACAAGAAGAGAGATTGGAGGTTTGAGGAAATCCTTTTGTCCATTGGTAAGCTCGGTGATTGGGGAATCAAGAAAGCTTTGGGAAGTTTATCTCCTAATTTGAGAAGCATTTGGGGAAGGATTTGCATGTTTGTTGTCCACTTTGTTGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATTGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCACCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGTCGTGCAGACACACTCTTAGTTATGTGA 2991 45.64 MYDVSESAERDRIKDGDRIEEKAVKSQRWEKAGRKTCFRPSQLMSLRYYQSRTLNRLEPGPNGFQVIGILRISMEMPGRRLNYTLLSQIPDDQYSGGVAGVSTTFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQMAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSMSSVEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQGISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFSDCQLLNVVFDEASSCNHTEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDSDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNLIQPTVQVEDSIPLKYVPHINRGSVQSLLDMSQPRMDSTMDLRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQEKNKKRDWRFEEILLSIGKLGDWGIKKALGSLSPNLRSIWGRICMFVVHFVAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSTIMETLKPMTKQAPPQQGRADTLLVM 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32788825 32805491 - ClG42_10g0191600.10 Clacu10g1916 260540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1916 996 Gene3D Transferase(Phosphotransferase) domain 1 749 990 - -
Clacu10g1916 996 SMART serkin_6 670 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1916 996 CDD STKc_MAP3K-like 676 976 - -
Clacu10g1916 996 FunFam Serine/threonine-protein kinase isoform 1 660 748 - -
Clacu10g1916 996 ProSitePatterns Protein kinases ATP-binding region signature. 676 697 IPR017441 GO:0005524(InterPro)
Clacu10g1916 996 Gene3D Phosphorylase Kinase; domain 1 663 748 - -
Clacu10g1916 996 ProSiteProfiles Protein kinase domain profile. 670 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1916 996 PANTHER SERINE-THREONINE PROTEIN KINASE 220 979 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu10g1916 996 Pfam Ethylene-responsive protein kinase Le-CTR1 266 470 - -
Clacu10g1916 996 SUPERFAMILY Protein kinase-like (PK-like) 652 976 IPR011009 -
Clacu10g1916 996 Pfam Protein tyrosine and serine/threonine kinase 671 876 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1916 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu10g1916 Clacu-Chr10:32788825 Clacu11g1648 Clacu-Chr11:27621285 8.20E-168 dispersed
Clacu10g1916 Clacu-Chr10:32788825 Clacu04g1031 Clacu-Chr4:24581566 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73906 PF07714 PK_Tyr_Ser-Thr 5.30E-58 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1916 K14510 - csv:101208452 1624.76