Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu10g1925 ATGATGATGATGATGATGATGATGATGATGGGGAAGGGGAAGGGGAAGGGGAAGGTGGGGGTGAAGATTTTCAGTTCCGCCATAACTTTCTTTTTCACTCTTACCCTTTTGGTCTCTCCTTCTCTTTCTTCAGATGATTCTTCTGCTCTCACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGGGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTCGATCAGCTTCGCCATCTTGACCTCCATGACAACCGTTTGAACGGAACCATTTCGCCGCTTGTTAACTGTACGAATCTTAAACTGTTGTATCTTTCCGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTCCTCCGGCTGGATTTGTCCGATAACAACATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTAGGCTCCTCACGTTACGTTTGCAGAACAATGTCCTCTCCGGTACGGTGCCTGATCTCTCTGTTTCGCTTGTGAACCTCACTGAACTTAATTTAACCAACAATGAACTGTACGGACGGTTGCCGGACGGGATGTTCAAGAAATTCGGTGAGAAGAGTTTCACTGGAAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTGGTTCACCGCCGACGTCGGATTCTACCAGAACGGTACCTTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTAGTCCGAACAGTAAAGAATCTCGAAGAGGGCTCAGCCCTGGGGTGATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTGCTTGTGATTATCTCGTTCATCGTCGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCGAGTTCCATGACCGGGAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAAGTGTACGCCAATGGCGGTGGTGACAGTGATGGCACTAACGCGACAGACAGAAGCAAACTAGTGTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCGTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACGGTTTACCGTGCGGTTCTTGACGACGGTTGTACGGTGGCGGTGAAGAGGTTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATTGGGAAGCTGAAACATCCCAATATTGTGAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGGAGTCTACATTCTCTTCTCCATGGAAATCGAGGCCCAGGGAGGATTCCATTGGATTGGACGACCAGGATCAGTTTAGTTCTGGGAGCTGCTCGTGGCTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATTCCCCATGGGAATGTCAAATCTTCCAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTATCTTTGCTTCTCAACCCAGTCCATGCCATTGCAAGGTTGGGAGGCTACAAGGCCCCAGAACAAGACGAGACTAAACGTCTCTCTCAAAAAGCAGATGTTTATAGCTTTGGAGTCTTATTGCTCGAAGTCTTAACAGGACGTGCACCGTCGCTCTACCCGTCACCTTCGAACCCAAGAAGCGACGACGAAGAGCAGCCAGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTTGATCCAGAGCTATTAAGGTACAAGAACATTGAGGAGGAGCTTGTGTCCATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCAGAAGTGGCGAAGATGATCGAAGATATTAGGGTCGAGCAATCCCCACTCGGAGAAGATTACGACGAATCGCGCAATTCGCTTTCGCCTTCCCTAGCCACCACAGAAGATGTGGGAAACATCACTTGA 2085 48.39 MMMMMMMMMMGKGKGKGKVGVKIFSSAITFFFTLTLLVSPSLSSDDSSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRHLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELYGRLPDGMFKKFGEKSFTGNEGVCGSSPLPICSVTGSPPTSDSTRTVPSNPSSLPQNPIISPNSKESRRGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDVGNIT 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32873139 32875486 + ClG42_10g0192500.10 Clacu10g1925 260549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu10g1925 694 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 458 671 - -
Clacu10g1925 694 MobiDBLite consensus disorder prediction 250 284 - -
Clacu10g1925 694 SUPERFAMILY Protein kinase-like (PK-like) 386 659 IPR011009 -
Clacu10g1925 694 Gene3D Phosphorylase Kinase; domain 1 355 457 - -
Clacu10g1925 694 MobiDBLite consensus disorder prediction 673 694 - -
Clacu10g1925 694 FunFam pollen receptor-like kinase 1 353 457 - -
Clacu10g1925 694 Pfam Leucine Rich repeats (2 copies) 110 145 IPR025875 -
Clacu10g1925 694 Pfam Leucine Rich Repeat 158 179 IPR001611 GO:0005515(InterPro)
Clacu10g1925 694 Pfam Leucine Rich Repeat 205 223 IPR001611 GO:0005515(InterPro)
Clacu10g1925 694 FunFam Leucine-rich repeat receptor-like protein kinase 43 198 - -
Clacu10g1925 694 Gene3D Ribonuclease Inhibitor 130 249 IPR032675 -
Clacu10g1925 694 Gene3D Ribonuclease Inhibitor 40 129 IPR032675 -
Clacu10g1925 694 Pfam Leucine rich repeat N-terminal domain 44 83 IPR013210 -
Clacu10g1925 694 MobiDBLite consensus disorder prediction 250 285 - -
Clacu10g1925 694 SUPERFAMILY L domain-like 44 224 - -
Clacu10g1925 694 CDD STKc_IRAK 388 662 - -
Clacu10g1925 694 ProSiteProfiles Protein kinase domain profile. 382 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu10g1925 694 MobiDBLite consensus disorder prediction 321 356 - -
Clacu10g1925 694 MobiDBLite consensus disorder prediction 321 336 - -
Clacu10g1925 694 Gene3D Transferase(Phosphotransferase) domain 1 458 680 - -
Clacu10g1925 694 MobiDBLite consensus disorder prediction 668 694 - -
Clacu10g1925 694 Pfam Protein tyrosine and serine/threonine kinase 386 657 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu10g1925 694 ProSiteProfiles Leucine-rich repeat profile. 110 132 IPR001611 GO:0005515(InterPro)
Clacu10g1925 694 PANTHER OS05G0588300 PROTEIN 29 668 IPR050994 -
Clacu10g1925 694 SMART LRR_typ_2 108 132 IPR003591 -
Clacu10g1925 694 SMART LRR_typ_2 203 227 IPR003591 -
Clacu10g1925 694 SMART LRR_typ_2 155 179 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2440 Clacu-Chr5:32604044 Clacu10g1925 Clacu-Chr10:32873139 1.10E-62 dispersed
Clacu06g1126 Clacu-Chr6:21347586 Clacu10g1925 Clacu-Chr10:32873139 3.20E-91 dispersed
Clacu07g0697 Clacu-Chr7:13972155 Clacu10g1925 Clacu-Chr10:32873139 1.90E-72 dispersed
Clacu09g2137 Clacu-Chr9:36146097 Clacu10g1925 Clacu-Chr10:32873139 1.70E-52 dispersed
Clacu10g1925 Clacu-Chr10:32873139 Clacu11g0283 Clacu-Chr11:2613618 1.90E-70 dispersed
Clacu10g1925 Clacu-Chr10:32873139 Clacu11g0407 Clacu-Chr11:3813284 5.10E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73907 PF00069 Pkinase 3.30E-33 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu10g1925 - - - 0.0